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Relevance to Autism

De novo variants in the EPHB1 gene have been identified in ASD probands in mutiple studies, including two de novo missense variants in ASD probands from the Simons Simplex Collection and a de novo frameshift variant in an ASD proband from the Autism Sequencing Consortium (Kong et al., 2012; Iossifov et al., 2014; Sanders et al., 2015; Yuen et al., 2016; Yuen et al., 2017; Turner et al., 2017; Werling et al., 2018; Satterstrom et al., 2020). Functional assessment of the ASD-associated p.Val916Met missense variant, which was originally observed in an SSC proband, in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing EPHB1-p.Val916Met presented with a complex phenotype characterized by a loss-of-function effect in eyes and a gain-of-function effect in wings.

Molecular Function

Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Ephrin receptors make up the largest subgroup of the receptor tyrosine kinase (RTK) family. The protein encoded by this gene is a receptor for ephrin-B family members.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Rate of de novo mutations and the importance of father's age to disease risk.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1322R001 
 missense_variant 
 c.2746G>A 
 p.Val916Met 
 De novo 
  
 Simplex 
 GEN1322R002 
 missense_variant 
 c.2347G>A 
 p.Gly783Arg 
 De novo 
  
 Simplex 
 GEN1322R003 
 missense_variant 
 c.2757G>T 
 p.Trp919Cys 
 De novo 
  
 Simplex 
 GEN1322R004 
 splice_region_variant 
 c.2691-6C>T 
  
 De novo 
  
  
 GEN1322R005 
 intron_variant 
 c.2346+2675T>A 
  
 De novo 
  
 Simplex 
 GEN1322R006 
 intron_variant 
 c.123+11712C>T 
  
 De novo 
  
 Simplex 
 GEN1322R007 
 intron_variant 
 c.805+16833del 
  
 De novo 
  
 Multiplex 
 GEN1322R008 
 intron_variant 
 c.2346+15804_2346+15805del 
  
 De novo 
  
 Simplex 
 GEN1322R009 
 intron_variant 
 c.805+39329G>T 
  
 De novo 
  
 Multiplex 
 GEN1322R010 
 intron_variant 
 c.58+20711T>C 
  
 De novo 
  
 Multiplex 
 GEN1322R011 
 intron_variant 
 c.805+18449T>C 
  
 De novo 
  
 Multiplex 
 GEN1322R012 
 intron_variant 
 c.58+41646A>G 
  
 De novo 
  
 Multiplex 
 GEN1322R013 
 intron_variant 
 c.806-10682C>G 
  
 De novo 
  
 Multiplex 
 GEN1322R014 
 intron_variant 
 c.805+29362C>T 
  
 De novo 
  
 Multiplex 
 GEN1322R015 
 intron_variant 
 c.2497-1403T>G 
  
 De novo 
  
 Multiplex 
 GEN1322R016 
 intron_variant 
 c.1298-960C>T 
  
 De novo 
  
 Multiplex 
 GEN1322R017 
 intron_variant 
 c.806-18708G>A 
  
 De novo 
  
 Multiplex 
 GEN1322R018 
 intron_variant 
 c.805+6954C>G 
  
 De novo 
  
 Simplex 
 GEN1322R019 
 intron_variant 
 c.806-67558_806-67556del 
  
 De novo 
  
 Simplex 
 GEN1322R020 
 intron_variant 
 c.2347-17395del 
  
 De novo 
  
 Simplex 
 GEN1322R021 
 intron_variant 
 c.806-13351_806-13348del 
  
 De novo 
  
 Simplex 
 GEN1322R022 
 intron_variant 
 c.962-8928A>G 
  
 De novo 
  
 Simplex 
 GEN1322R023 
 intron_variant 
 c.805+50031A>G 
  
 De novo 
  
 Simplex 
 GEN1322R024 
 intron_variant 
 c.961+128del 
  
 De novo 
  
 Simplex 
 GEN1322R025 
 intron_variant 
 c.2130+3097A>G 
  
 De novo 
  
 Simplex 
 GEN1322R026 
 intron_variant 
 c.805+62187G>A 
  
 De novo 
  
 Simplex 
 GEN1322R027 
 intron_variant 
 c.1297+1514G>A 
  
 De novo 
  
 Simplex 
 GEN1322R028 
 intron_variant 
 c.58+29164_58+29180del 
  
 De novo 
  
 Simplex 
 GEN1322R029 
 frameshift_variant 
 c.1712_1713del 
 p.Lys571ArgfsTer7 
 De novo 
  
  
 GEN1322R030 
 missense_variant 
 c.153C>A 
 p.Asn51Lys 
 De novo 
  
  
 GEN1322R031 
 missense_variant 
 c.1160C>T 
 p.Thr387Met 
 De novo 
  
  
 GEN1322R032 
 splice_region_variant 
 c.2497-5T>C 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion
 1
 
3
Deletion
 1
 
3
Duplication
 4
 
3
Deletion
 1
 
3
Deletion-Duplication
 16
 

No Animal Model Data Available

 

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