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Relevance to Autism

De novo variants in the EPHA1 gene have been identified in ASD probands, including a de novo missense variant (p.Val567Ile) in a proband from the Simons Simplex Collection and two additional de novo missense variants in probands from the SPARK cohort and the Autism Sequencing Consortium (Iossifov et al., 2014; Sanders et al., 2015; Feliciano et al. 2019; Satterstrom et al., 2020), while inherited loss-of-function variants in this gene were observed in multiple ASD-affected siblings in two unrelated multiplex families from the iHART cohort (Ruzzo et al., 2019). Functional assessment of the ASD-associated p.Val567Ile missense variant in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing EPHA1-p.Val567Ile presented with a phenotype of serrated wings of normal size, compared to the reduced wing-size and wing-margin serration phenotypes caused by the reference EPHA1 allele, indicating a partial loss-of-function effect.

Molecular Function

This gene belongs to the ephrin receptor subfamily of the protein-tyrosine kinase family. EPH and EPH-related receptors have been implicated in mediating developmental events, particularly in the nervous system. Receptors in the EPH subfamily typically have a single kinase domain and an extracellular region containing a Cys-rich domain and 2 fibronectin type III repeats. The ephrin receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. This gene is expressed in some human cancer cell lines and has been implicated in carcinogenesis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1321R001 
 missense_variant 
 c.1699G>A 
 p.Val567Ile 
 De novo 
  
 Simplex 
 GEN1321R002 
 intron_variant 
 c.1712+19del 
  
 De novo 
  
  
 GEN1321R003 
 intron_variant 
 c.1616-44C>T 
  
 De novo 
  
  
 GEN1321R004 
 stop_gained 
 c.1519C>T 
 p.Gln507Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1321R005 
 frameshift_variant 
 c.1189_1190insCCCGGGGG 
 p.Arg397ProfsTer60 
 Familial 
 Paternal 
 Multiplex 
 GEN1321R006 
 missense_variant 
 c.577G>A 
 p.Ala193Thr 
 De novo 
  
  
 GEN1321R007 
 missense_variant 
 c.1052G>T 
 p.Arg351Leu 
 De novo 
  
  
 GEN1321R008 
 synonymous_variant 
 c.1923G>A 
 p.Gly641%3D 
 De novo 
  
  
 GEN1321R009 
 missense_variant 
 c.577G>A 
 p.Ala193Thr 
 De novo 
  
  
 GEN1321R010 
 missense_variant 
 c.335G>A 
 p.Gly112Glu 
 De novo 
  
  
 GEN1321R011 
 stop_gained 
 c.2353G>T 
 p.Gly785Ter 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Duplication
 1
 
7
Deletion
 1
 
7
Duplication
 1
 
7
Deletion
 2
 
7
Deletion
 1
 
7
Duplication
 1
 
7
Deletion
 1
 
7
Deletion
 1
 
7
Deletion
 4
 

No Animal Model Data Available

 

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