Summary Statistics:
ASD Reports: 10
Recent Reports: 2
Annotated variants: 71
Associated CNVs: 5
Evidence score: 4
Gene Score: 3
Relevance to Autism
A compound heterozygous mutation in the EP400 gene was identified in an ASD proband from a nonconsanguineous family that showed evidence of distant shared ancestry as identified by homozygosity analysis (Chahrour et al., 2012). A de novo missense variant in the gene was subseuqently identified by exome sequencing in an ASD case from the Simons Simplex Collection (Iossifov et al., 2012).
Molecular Function
Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. May be required for transcriptional activation of E2F1 and MYC target genes during cellular proliferation. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. May regulate ZNF42 transcription activity. Component of a SWR1-like complex that specifically mediates the removal of histone H2A.Z/H2AFZ from the nucleosome.
References
Primary
Whole-exome sequencing and homozygosity analysis implicate depolarization-regulated neuronal genes in autism.
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder.
ASD
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD, seizures
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
GEN353R001a
missense_variant
c.4945G>A
p.Ala1649Thr
Familial
Extended multiplex
GEN353R001b
missense_variant
c.6097C>T
p.Pro2033Ser
Familial
Extended multiplex
GEN353R002
missense_variant
c.5923G>A
p.Gly1975Arg
De novo
Simplex
GEN353R003
frameshift_variant
c.1844_1847dup
p.Gln617LeufsTer75
De novo
Simplex
GEN353R004
frameshift_variant
c.85_86insG
p.Pro29ArgfsTer36
Familial
Multiplex
GEN353R005
frameshift_variant
c.85_86insG
p.Pro29ArgfsTer36
Familial
Simplex
GEN353R006
frameshift_variant
c.85_86insG
p.Pro29ArgfsTer36
Familial
Simplex
GEN353R007
frameshift_variant
c.85_86insG
p.Pro29ArgfsTer36
Familial
Simplex
GEN353R008
frameshift_variant
c.88dup
p.Ala30GlyfsTer35
Familial
Multiplex
GEN353R009
stop_gained
c.8854C>T
p.Pro2952Ser
Familial
Paternal
Simplex
GEN353R010
missense_variant
c.214G>A
p.Val72Met
Familial
Paternal
Simplex
GEN353R011
missense_variant
c.2035G>C
p.Gly679Arg
Familial
Maternal
Simplex
GEN353R012
missense_variant
c.4031G>A
p.Gly1344Asp
Familial
Paternal
Simplex
GEN353R013
missense_variant
c.4352G>A
p.Arg1451Gln
Familial
Maternal
Simplex
GEN353R014
missense_variant
c.6436G>A
p.Glu2146Lys
Familial
Paternal
Simplex
GEN353R015
missense_variant
c.7945G>A
p.Gly2649Ser
Familial
Paternal
Simplex
GEN353R016
missense_variant
c.7945G>A
p.Gly2649Ser
Familial
Maternal
Simplex
GEN353R017
missense_variant
c.2460A>C
p.Glu820Asp
Familial
Paternal
Simplex
GEN353R018
missense_variant
c.3850T>C
p.Tyr1284His
Familial
Maternal
Simplex
GEN353R019
missense_variant
c.5338A>C
p.Thr1780Pro
Familial
Maternal
Simplex
GEN353R020
missense_variant
c.5616G>C
p.Gln1872His
Familial
Paternal
Simplex
GEN353R021
missense_variant
c.8429A>C
p.Gln2810Pro
Familial
Maternal
Simplex
GEN353R022
missense_variant
c.8429A>C
p.Gln2810Pro
Familial
Paternal
Simplex
GEN353R023
missense_variant
c.8429A>C
p.Gln2810Pro
Familial
Maternal
Multiplex
GEN353R024
missense_variant
c.4544C>G
p.Pro1515Arg
Familial
Maternal
Simplex
GEN353R025
missense_variant
c.5774A>G
p.Asn1925Ser
Familial
Paternal
Simplex
GEN353R026
missense_variant
c.5942A>G
p.His1981Arg
Familial
Paternal
Simplex
GEN353R027
missense_variant
c.8986C>G
p.Leu2996Val
Familial
Maternal
Simplex
GEN353R028
missense_variant
c.1335+1644C>T
Familial
Maternal
Simplex
GEN353R029
missense_variant
c.3388C>T
p.Leu1130Phe
Familial
Paternal
Simplex
GEN353R030
missense_variant
c.4090C>T
p.Leu1364=
Familial
Maternal
Simplex
GEN353R031
missense_variant
c.4352G>A
p.Arg1451Gln
Familial
Maternal
Simplex
GEN353R032
missense_variant
c.5437C>T
p.Arg1813Trp
Familial
Maternal
Simplex
GEN353R033
missense_variant
c.6097C>T
p.Pro2033Ser
Familial
Paternal
Simplex
GEN353R034
missense_variant
c.6097C>T
p.Pro2033Ser
Familial
Paternal
Simplex
GEN353R035
missense_variant
c.7535C>T
p.Pro2512Leu
Familial
Maternal
Simplex
GEN353R036
missense_variant
c.7958C>T
p.Thr2653Met
Familial
Maternal
Simplex
GEN353R037
missense_variant
c.8071C>T
p.Arg2691Trp
Familial
Maternal
Simplex
GEN353R038
missense_variant
c.8006C>T
p.Ala2669Val
Familial
Maternal
Simplex
GEN353R039
missense_variant
c.8149C>T
p.Leu2717Phe
Familial
Paternal
Simplex
GEN353R040
missense_variant
c.8453C>T
p.Pro2818Leu
Familial
Maternal
Simplex
GEN353R041
stop_gained
c.175C>T
p.Gln59Ter
Unknown
Unknown
GEN353R042
missense_variant
c.2597A>C
p.Lys866Thr
Unknown
Unknown
GEN353R043
missense_variant
c.8006C>T
p.Ala2669Val
Unknown
Unknown
GEN353R044
missense_variant
c.8408C>T
p.Ala2803Val
Unknown
Unknown
GEN353R045
missense_variant
c.2242C>T
p.Arg748Cys
Unknown
Unknown
GEN353R046
missense_variant
c.2818G>A
p.Ala940Thr
Unknown
Unknown
GEN353R047
missense_variant
c.3041G>A
p.Gly1014Glu
Unknown
Unknown
GEN353R048
missense_variant
c.8863G>A
p.Val2955Ile
Unknown
Unknown
GEN353R049
missense_variant
c.8926G>A
p.Ala2976Thr
Unknown
Unknown
GEN353R050
translocation
De novo
GEN353R051
missense_variant
c.5818C>T
p.Arg1940Cys
De novo
Simplex
GEN353R052
missense_variant
c.4324G>A
p.Val1442Met
Unknown
GEN353R053
synonymous_variant
c.3138T>C
p.Asn1046%3D
Unknown
GEN353R054
synonymous_variant
c.3771C>T
p.Val1257%3D
De novo
GEN353R055
missense_variant
c.428C>T
p.Pro143Leu
De novo
Multiplex
GEN353R056
missense_variant
c.1117T>C
p.Tyr373His
De novo
Multiplex
GEN353R057
intron_variant
c.1335+1573C>T
De novo
Simplex
GEN353R058
synonymous_variant
c.3630G>A
p.Leu1210%3D
De novo
Multiplex
GEN353R059
missense_variant
c.3889A>G
p.Lys1297Glu
De novo
Multiplex
GEN353R060
stop_gained
c.7453C>T
p.Arg2485Ter
De novo
Simplex
GEN353R061
synonymous_variant
c.8166G>A
p.Gln2722%3D
De novo
Simplex
GEN353R062
missense_variant
c.980T>G
p.Val327Gly
De novo
GEN353R063
missense_variant
c.3650A>G
p.Asn1217Ser
De novo
GEN353R064
synonymous_variant
c.6879C>T
p.Arg2293%3D
De novo
GEN353R065
missense_variant
c.6885G>C
p.Glu2295Asp
De novo
GEN353R066
inframe_insertion
c.842_859dup
p.Gln281_Pro286dup
De novo
Simplex
GEN353R067
synonymous_variant
c.5493G>A
p.Glu1831%3D
De novo
Simplex
GEN353R068
missense_variant
c.8411C>T
p.Pro2804Leu
De novo
Simplex
GEN353R069
missense_variant
c.1088A>C
p.Gln363Pro
Familial
Maternal
GEN353R070
missense_variant
c.1190A>G
p.Gln397Arg
Familial
Paternal
No Common Variants Available
12
Deletion-Duplication
2
12
Deletion-Duplication
31
No Animal Model Data Available
Summary Statistics:
Total Interactions: 56
Total Publications: 26
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Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ACTBL2
actin, beta-like 2
345651
Q562R1
IP/WB
Fuchs M , et al. 2001
ACTL6A
actin-like 6A
86
O96019
IP/WB
Fuchs M , et al. 2001
ALAS1
aminolevulinate, delta-, synthase 1
211
P13196
Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
C20ORF20
MRG/MORF4L binding protein
55257
A8C4L5
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDKN1A
cyclin-dependent kinase inhibitor 1A (p21, Cip1)
1026
P38936
ChIP
Chan HM , et al. 2005
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
CTNNB1
catenin (cadherin-associated protein), beta 1, 88kDa
1499
Q9WU82
GST; MALDI-TOF
Sierra J , et al. 2006
E1A
Early E1A 29.5 kDa protein
1460853
P03259
IP/WB
Fuchs M , et al. 2001
E2
Regulatory protein E2
1489080
P03120
IP/WB
Smith JA , et al. 2010
E2F1
E2F transcription factor 1
1869
Q01094
IP/WB
Helgason GV , et al. 2010
EP300
E1A binding protein p300
2033
Q9Y6B2
IP/WB
Fuchs M , et al. 2001
EPC1
enhancer of polycomb homolog 1 (Drosophila)
80314
Q9H2F5
IP/WB
Fuchs M , et al. 2001
FOXR1
Forkhead box protein R1
283150
Q6PIV2
IP; LC-MS/MS
Huttlin EL , et al. 2015
FOXR2
Forkhead box protein R2
139628
Q6PJQ5
IP; LC-MS/MS
Huttlin EL , et al. 2015
H2AFZ
H2A histone family, member Z
3015
P0C0S5
SILAC; LC-MS/MS
Bnisch C , et al. 2012
HIST1H2BA
Histone H2B type 1-A
255626
Q96A08
IP; LC-MS/MS
Huttlin EL , et al. 2015
KAT5
K(lysine) acetyltransferase 5
10524
Q92993
IP/WB
Fuchs M , et al. 2001
KAT5
K(lysine) acetyltransferase 5
10524
Q92993
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAX
MYC associated factor X
4149
P61244
IP/WB
Fuchs M , et al. 2001
MDC1
mediator of DNA-damage checkpoint 1
9656
A1Z5I9
ChIP
Xu Y , et al. 2010
MEAF6
MYST/Esa1-associated factor 6
64769
Q9HAF1
IP; LC-MS/MS
Huttlin EL , et al. 2015
MORF4L1
mortality factor 4 like 1
10933
B7Z6R1
TAP; MS
Sy SM , et al. 2009
MORF4L1
mortality factor 4 like 1
10933
B7Z6R1
IP; LC-MS/MS
Huttlin EL , et al. 2015
MORF4L2
mortality factor 4 like 2
9643
Q15014
IP; MS
Hayakawa T , et al. 2010
MORF4L2
mortality factor 4 like 2
9643
Q15014
IP; LC-MS/MS
Huttlin EL , et al. 2015
MYC
v-myc myelocytomatosis viral oncogene homolog (avian)
4609
P01106
IP/WB
Fuchs M , et al. 2001
MZF1
myeloid zinc finger 1
7593
P28698
Y2H; IP/WB
Ogawa H , et al. 2003
NS3
Envelope small membrane protein
2648206
Q04854
Y2H; IP/WB
Iwai A , et al. 2011
PLAC1
placenta-specific 1
10761
Q9HBJ0
IP; LC-MS/MS
Huttlin EL , et al. 2015
RBFOX1
RNA binding protein, fox-1 homolog (C. elegans) 1
54715
Q9NWB1
qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RUVBL1
RuvB-like 1 (E. coli)
8607
Q9Y265
IP/WB
Fuchs M , et al. 2001
RUVBL1
RuvB-like 1 (E. coli)
8607
Q9Y265
IP; LC-MS/MS
Huttlin EL , et al. 2015
RUVBL2
RuvB-like 2 (E. coli)
10856
Q9Y230
IP/WB
Fuchs M , et al. 2001
RUVBL2
RuvB-like 2 (E. coli)
10856
Q9Y230
IP; LC-MS/MS
Huttlin EL , et al. 2015
SSX3
Protein SSX3
10214
Q99909
IP; LC-MS/MS
Huttlin EL , et al. 2015
STAT2
Signal transducer and activator of transcription 2
6773
P52630
IP; LC-MS/MS
Huttlin EL , et al. 2015
TAT
tyrosine aminotransferase
6898
P17735
GST; MS
Gautier VW , et al. 2009
TBC1D4
TBC1 domain family, member 4
9882
O60343
Y2H
Nakayama M , et al. 2002
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
TP53
tumor protein p53
7157
P04637
ChIP
Chan HM , et al. 2005
TRRAP
transformation/transcription domain-associated protein
8295
Q9Y4A5
IP/WB
Fuchs M , et al. 2001
UBC
ubiquitin C
7316
P63279
LC-MS/MS
Danielsen JM , et al. 2010
UL27
Envelope glycoprotein B
2703455
P10211
IP; MS; IP/WB
Reitsma JM , et al. 2011
YEATS4
YEATS domain containing 4
8089
O95619
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZMYND11
zinc finger, MYND-type containing 11
10771
Q5BJG6
IP/WB
Zhang W , et al. 2007
Arhgef12
Rho guanine nucleotide exchange factor (GEF) 12
69632
Q8R4H2
ChIP
Fazzio TG , et al. 2008
Col4a1
collagen, type IV, alpha 1
12826
P02463
ChIP
Fazzio TG , et al. 2008
Cul3
cullin 3
26554
Q9JLV5
IP/WB
Mathew R , et al. 2012
Dmap1
DNA methyltransferase 1-associated protein 1
66233
B1AUK1
IP; MS; IP/WB
Kim J , et al. 2010
FMR1
fragile X mental retardation 1
14265
P35922
HITS-CLIP
Darnell JC , et al. 2011
Gata4
GATA binding protein 4
14463
Q08369
ChIP
Fazzio TG , et al. 2008
Gata6
GATA binding protein 6
14465
Q61169
ChIP
Fazzio TG , et al. 2008
Lars
leucyl-tRNA synthetase
107045
Q7TSZ3
ChIP
Fazzio TG , et al. 2008
Phf5a
PHD finger protein 5A
68479
P83870
Y2H
Rzymski T , et al. 2008
Rps9
ribosomal protein S9
76846
Q6ZWN5
ChIP
Fazzio TG , et al. 2008