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Relevance to Autism

The same homozygous missense variant in the EIF3F gene (c.694T>G;p.Phe232Val) was identified in two recently described individuals who were diagnosed with ASD and presented with additional neurodevelopmental comorbidities (Bar et al., 2024; Lob et al., 2024). The homozygous p.Phe232Val missense variant in EIF3F has previously been associated with an autosomal recessive neurodevelopmental disorder characterized by global developmental delay, intellectual disability, behavioral problems, and hearing loss (Martin et al., 2018; Huffmeier et al., 2021); autism or autistic behavior was reported in a subset of individuals. Martin et al., 2018 had additionally demonstrated in CRISPR-Cas9-edited iPSCs that cells homozygous for the p.Phe232Val variant displayed approximately 27% lower EIF3F protein levels and reduced proliferation rates relative to heterozygous and wild-type cells. De novo missense variants in the EIF3F gene have also been identified in ASD probands from the Autism Sequencing Consortium and the SPARK cohort (Satterstrom et al., 2020; Trost et al., 2022).

Molecular Function

Enables deubiquitinase activity and identical protein binding activity. Contributes to translation initiation factor activity. Involved in IRES-dependent viral translational initiation; protein deubiquitination; and translational initiation. Located in membrane. Part of eukaryotic translation initiation factor 3 complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genetic Diagnostic Yield in Autism Spectrum Disorder (ASD) and Epilepsy Phenotypes in Children with Genetically Defined ASD
ASD
DD
Support
Reanalysis of Trio Whole-Genome Sequencing Data Doubles the Yield in Autism Spectrum Disorder: De Novo Variants Present in Half
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
EIF3F-related neurodevelopmental disorder: refining the phenotypic and expanding the molecular spectrum
Intellectual developmental disorder, autosomal rec
ASD or autistic features, epilepsy/seizures
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Intellectual developmental disorder, autosomal rec
Epilepsy/seizures, autistic behavior
Support
Rare Variant Burden and Behavioral Phenotypes in Children with Autism in Slovakia
ASD
Support
Genetic Diagnostics and Phenotypic Profiling of a Girl With Autosomal Recessive Intellectual Developmental Disorder and Autism
ASD, DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1464R001a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Unknown 
  
  
 GEN1464R002a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Unknown 
  
 Extended multiplex 
 GEN1464R003a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R004a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R005a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R006a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R007a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R008a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R009a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Unknown 
  
 Simplex 
 GEN1464R010a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R011a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R012a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Maternal 
 Simplex 
 GEN1464R012b 
 frameshift_variant 
 c.861dup 
 p.Gln288AlafsTer14 
 Familial 
 Paternal 
 Simplex 
 GEN1464R013a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R014a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R015a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R016a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R017a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R018a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
  
 GEN1464R019a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R020a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R021a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R022a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R023a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Multiplex 
 GEN1464R024a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R025a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Unknown 
  
 Simplex 
 GEN1464R026a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R027 
 missense_variant 
 c.1048C>T 
 p.Leu350Phe 
 De novo 
  
  
 GEN1464R028 
 missense_variant 
 c.864A>T 
 p.Gln288His 
 De novo 
  
  
 GEN1464R029a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Familial 
 Both parents 
 Simplex 
 GEN1464R030a 
 missense_variant 
 c.694T>G 
 p.Phe232Val 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Deletion-Duplication
 34
 
11
Duplication
 1
 
11
Duplication
 3
 

No Animal Model Data Available

 

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