Summary Statistics:
ASD Reports: 80
Recent Reports: 13
Annotated variants: 278
Associated CNVs: 10
Evidence score: 5
Gene Score: 1S
Relevance to Autism
Recurrent mutations in the DYRK1A gene have been identified in multiple individuals with ASD as described below. A total of four de novo LoF variants in the DYRK1A gene were identified in ASD probands from the Simons Simplex Collection (PMIDs 22495309, 22542183, 23160955, 25363768). Analysis of rare coding variation in 3,871 ASD cases and 9,937 ancestry-matched or paternal controls from the Autism Sequencing Consortium (ASC) in De Rubeis et al., 2014 identified DYRK1A as a gene meeting high statistical significance with a FDR 0.01, meaning that this gene had a 99% chance of being a true autism gene (PMID 25363760). This gene was identified in Iossifov et al. 2015 as a strong candidate to be an ASD risk gene based on a combination of de novo mutational evidence and the absence or very low frequency of mutations in controls (PMID 26401017). Resequencing of the DYRK1A gene in 4716 new cases with DD/ID or ASD in van Bon et al., 2016 identified five novel truncating variants, three of which were confirmed de novo and were observed in cases with ASD and intellectual disability; no truncating variants in DYRK1A were observed in 6503 individuals from NHLBI or in 2193 unaffected SSC siblings (PMID 25707398). Furthermore, phenotypic comparison of 15 cases with DYRK1A disruptions in this report identified a syndromic disorder characterized by ASD, intellectual disability, microcephaly and other shared phenotypes. Evers et al., 2017 reported additional de novo DYRK1A variants identified in individuals from the Deciphering Developmental Disorders study presenting with intellectual disability and other features (PMID 28053047). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified DYRK1A as a gene reaching exome-wide significance (P < 2.5E-06).
Molecular Function
This gene encodes a member of the Dual-specificity tyrosine phosphorylation-regulated kinase (DYRK) family. It may play a significant role in a signaling pathway regulating cell proliferation and may be involved in brain development. It is localized in the Down syndrome critical region of chromosome 21, and is considered to be a strong candidate gene for learning defects associated with Down syndrome. Defects in DYRK1A are the cause of mental retardation autosomal dominant type 7 (MRD7) [MIM:614104].
References
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders.
ID, epilepsy/seizures, microcephaly
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
DD, ID, epilepsy/seizures
Support
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
ASD
Support
Genetic landscape of autism spectrum disorder in Vietnamese children
ASD
Support
Clinical phenotype of ASD-associated DYRK1A haploinsufficiency.
DD, ID
ASD
Support
Autosomal dominant intellectual developmental diso
Support
Whole-exome sequencing is a powerful approach for establishing the etiological diagnosis in patients with intellectual disability and microcephaly.
DD
Microcephaly
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
ASD, DD/ID
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ASD, DD, ID, epilepsy/seizures
Support
ID, epilepsy/seizures
Support
Structural analysis of pathogenic mutations in the DYRK1A gene in patients with developmental disorders.
DD, microcephaly
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Impaired macroglial development and axonal conductivity contributes to the neuropathology of DYRK1A-related intellectual disability syndrome
Support
Gene Mutation Analysis in 253 Chinese Children with Unexplained Epilepsy and Intellectual/Developmental Disabilities.
DD, ID, epilepsy/seizures
Support
Genetic and phenotypic analysis of 101 patients with developmental delay or intellectual disability using whole-exome sequencing
DD, epilepsy/seizures
Support
The Body Size of Stimulus Conspecifics Affects Social Preference in a Binary Choice Task in Wild-Type, But Not in dyrk1aa Mutant, Zebrafish.
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Mental retardation, autosomal dominant 7
DD, ID, epilepsy/seizures
Support
Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean
ID, epilepsy/seizures
Support
Intragenic deletion in DYRK1A leads to mental retardation and primary microcephaly.
ID
Autistic features
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
DYRK1A mutations in two unrelated patients.
DD, epilepsy/seizures
Autistic features
Support
Ocular Phenotype Associated with DYRK1A Variants
Autosomal dominant mental retardation-7
DD, ID, epilepsy/seizures
Support
Neurological Diseases With Autism Spectrum Disorder: Role of ASD Risk Genes.
ASD
ID
Support
DD, epilepsy/seizures
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
Microcephaly, motor delay, speech delay
Autistic features
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Truncation of the Down syndrome candidate gene DYRK1A in two unrelated patients with microcephaly.
DD
Epilepsy, MR
Support
Autism risk in offspring can be assessed through quantification of male sperm mosaicism.
ASD
Support
Autosomal dominant intellectual developmental diso
Stereotypy
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Epilepsy/seizures
Support
Large-scale discovery of novel genetic causes of developmental disorders.
ASD, DD, epilepsy
Microcephaly
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
Elucidation of the phenotypic spectrum and genetic landscape in primary and secondary microcephaly.
Microcephaly
DD, epilepsy/seizures
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Full-length isoform transcriptome of the developing human brain provides further insights into autism
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Autosomal dominant intellectual developmental diso
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD, DD
Support
Comprehensive genome sequencing analyses identify novel gene mutations and copy number variations associated with infant developmental delay or intellectual disability (DD/ID)
DD, ID, epilepsy/seizures
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
A novel de novo heterozygous DYRK1A mutation causes complete loss of DYRK1A function and developmental delay
Autosomal dominant mental retardation-7
DD, epilepsy/seizures
Support
Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome.
ASD, DD, ID
Support
Autosomal dominant intellectual developmental diso
Autistic behavior
Support
High diagnostic yield of syndromic intellectual disability by targeted next-generation sequencing.
ID
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
Epilepsy/seizures, stereotypy
Support
DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract.
DD, ID
ASD, epilepsy/seizures, microcephaly
Support
Autism-associated Dyrk1a truncation mutants impair neuronal dendritic and spine growth and interfere with postnatal cortical development.
ASD, DD, ID
Support
Neurocognitive and neurobehavioral characterization of two frequent forms of neurodevelopmental disorders: the DYRK1A and the Wiedemann-Steiner syndromes
Autosomal dominant intellectual developmental diso
ASD
Support
Efficient strategy for the molecular diagnosis of intellectual disability using targeted high-throughput sequencing.
ID
Support
The neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and control of brain size in Xenopus embryos
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Case report of novel DYRK1A mutations in 2 individuals with syndromic intellectual disability and a review of the literature.
DD, ID
Epilepsy/seizures
Support
Clinical course of epilepsy and white matter abnormality linked to a novel DYRK1A variant
Autosomal dominant mental retardation-7
ASD, DD, epilepsy/seizures
Support
Characterization of intellectual disability and autism comorbidity through gene panel sequencing.
ID, ASD or autistic traits
Support
Autosomal dominant intellectual developmental diso
Recent Recommendation
DYRK1A promotes dopaminergic neuron survival in the developing brain and in a mouse model of Parkinson's disease.
Recent Recommendation
Phosphorylation of -Tubulin by the Down Syndrome Kinase, Minibrain/DYRK1a, Regulates Microtubule Dynamics and Dendrite Morphogenesis.
Recent Recommendation
The DYRK1A gene is a cause of syndromic intellectual disability with severe microcephaly and epilepsy.
ID
Epilepsy
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
ASD
Recent Recommendation
DYRK1A haploinsufficiency causes a new recognizable syndrome with microcephaly, intellectual disability, speech impairment, and distinct facies.
DD, ID, microcephaly
ASD, epilepsy/seizures
Recent Recommendation
ASD
Recent Recommendation
Ten new cases further delineate the syndromic intellectual disability phenotype caused by mutations in DYRK1A.
ID, ASD, epilepsy/seizures
Microcephaly
Recent Recommendation
Characterization of phenotypic range in DYRK1A haploinsufficiency syndrome using standardized behavioral measures
DD
ASD, epilepsy/seizures
Recent Recommendation
Disruptive de novo mutations of DYRK1A lead to a syndromic form of autism and ID.
ASD, ID
Epilepsy/seizures, microcephaly
Recent Recommendation
Integrative approach to interpret DYRK1A variants, leading to a frequent neurodevelopmental disorder
DD, ID, epilepsy/seizures
ASD, stereotypy
Recent Recommendation
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Functional characterization of DYRK1A missense variants associated with a syndromic form of intellectual deficiency and autism.
GEN367R001
splice_site_variant
c.1071+1G>A
De novo
Simplex
GEN367R002
frameshift_variant
c.1464del
p.Ala489ProfsTer94
De novo
Simplex
GEN367R003
translocation
De novo
Simplex
GEN367R004
translocation
De novo
Simplex
GEN367R005
copy_number_loss
De novo
GEN367R006
frameshift_variant
c.263_264del
p.Ser88CysfsTer2
De novo
GEN367R007
frameshift_variant
c.143_144del
p.Ile48LysfsTer2
De novo
Simplex
GEN367R008
intron_variant
c.1644+133T>G
Familial
Paternal
Simplex
GEN367R009
frameshift_variant
c.1519+1del
De novo
Simplex
GEN367R010
stop_gained
c.1282C>T
p.Arg428Ter
De novo
Simplex
GEN367R011
missense_variant
c.473A>G
p.Lys158Arg
Unknown
Unknown
GEN367R012
missense_variant
c.1541G>A
p.Ser514Asn
Unknown
Unknown
GEN367R013
frameshift_variant
c.236del
p.Pro79GlnfsTer6
De novo
Simplex
GEN367R014
missense_variant
c.860A>T
p.Asp287Val
De novo
Simplex
GEN367R015
missense_variant
c.620T>C
p.Leu207Pro
De novo
Simplex
GEN367R016
missense_variant
c.1036T>C
p.Ser346Pro
De novo
Simplex
GEN367R017
frameshift_variant
c.366_367dup
p.Glu123GlyfsTer19
De novo
Simplex
GEN367R018
stop_gained
c.664C>T
p.Arg222Ter
De novo
Simplex
GEN367R019
splice_site_variant
TTTCTCTT>TTT
De novo
GEN367R020
stop_gained
c.613C>T
p.Arg205Ter
De novo
GEN367R021
missense_variant
c.932C>T
p.Ser311Phe
De novo
GEN367R022
stop_gained
c.586C>T
p.Arg196Ter
De novo
Simplex
GEN367R023
frameshift_variant
c.621_624delinsGA
p.Glu208ThrfsTer6
De novo
Simplex
GEN367R024
stop_gained
c.799C>T
p.Gln267Ter
Unknown
Not maternal
GEN367R025
splice_site_variant
c.1240-2A>G
De novo
GEN367R026
splice_site_variant
c.489+2T>C
De novo
GEN367R027
stop_gained
c.367C>T
p.Gln123Ter
De novo
GEN367R028
splice_site_variant
c.638-9_638-5del
De novo
GEN367R029
splice_site_variant
c.208-1G>A
Familial
Maternal
GEN367R030
stop_gained
c.736C>T
p.Arg246Ter
De novo
GEN367R031
stop_gained
c.586C>T
p.Arg196Ter
De novo
GEN367R032
frameshift_variant
c.594_597delinsGAA
p.Glu199AsnfsTer3
De novo
GEN367R033
missense_variant
c.1036T>C
p.Ser346Pro
De novo
GEN367R034
frameshift_variant
c.918dup
p.Gln307AlafsTer24
De novo
GEN367R035
copy_number_loss
De novo
GEN367R036
stop_gained
c.1309C>T
p.Arg437Ter
Unknown
GEN367R037
frameshift_variant
c.817dup
p.Ser273LysfsTer6
De novo
Simplex
GEN367R038
missense_variant
c.1763C>A
p.Thr588Asn
De novo
Simplex
GEN367R039
frameshift_variant
c.1205dup
p.Arg404ThrfsTer10
De novo
GEN367R040
stop_gained
c.312C>G
p.Tyr104Ter
De novo
Simplex
GEN367R041
stop_gained
c.613C>T
p.Arg205Ter
De novo
Simplex
GEN367R042
stop_gained
c.1399C>T
p.Arg467Ter
De novo
Simplex
GEN367R043
frameshift_variant
c.434del
p.Lys145SerfsTer11
De novo
Simplex
GEN367R044
frameshift_variant
c.1074_1077del
p.Asp359ArgfsTer2
De novo
Simplex
GEN367R045
frameshift_variant
c.425dup
p.Asn142LysfsTer12
Unknown
Not maternal
Simplex
GEN367R046
missense_variant
c.563A>T
p.Lys188Ile
De novo
Simplex
GEN367R047
missense_variant
c.734T>G
p.Leu245Arg
De novo
Simplex
GEN367R048
missense_variant
c.883C>T
p.Leu295Phe
De novo
Simplex
GEN367R049
copy_number_loss
Familial
Maternal
Multiplex
GEN367R050
copy_number_loss
De novo
Simplex
GEN367R051
copy_number_loss
De novo
Simplex
GEN367R052
copy_number_loss
De novo
Simplex
GEN367R053
missense_variant
c.859G>T
p.Asp287Tyr
De novo
Simplex
GEN367R054
stop_gained
c.946C>T
p.Gln316Ter
De novo
Simplex
GEN367R055
frameshift_variant
c.1406del
p.Phe469SerfsTer114
Unknown
Not maternal
Simplex
GEN367R056
splice_site_variant
c.924+4_924+7del
De novo
Simplex
GEN367R057
stop_gained
c.760C>T
p.Arg254Ter
De novo
Simplex
GEN367R058
frameshift_variant
c.574_578del
p.Gln192ArgfsTer6
De novo
GEN367R059
stop_gained
c.457G>T
p.Glu153Ter
De novo
GEN367R060
missense_variant
c.1595C>T
p.Thr532Met
Familial
Paternal
GEN367R061
missense_variant
c.1040T>G
p.Leu347Arg
De novo
GEN367R062
translocation
De novo
GEN367R063
frameshift_variant
c.714del
p.Phe238LeufsTer12
De novo
Simplex
GEN367R064
frameshift_variant
c.33del
p.Lys11AsnfsTer38
De novo
GEN367R065
stop_gained
c.1309C>T
p.Arg437Ter
De novo
GEN367R066
missense_variant
c.829G>C
p.Ala277Pro
De novo
GEN367R067
frameshift_variant
c.887dup
p.Val297SerfsTer2
De novo
GEN367R068
frameshift_variant
c.275del
p.Ile92ThrfsTer49
De novo
GEN367R069
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN367R070
missense_variant
c.1400G>A
p.Arg467Gln
De novo
GEN367R071
splice_site_variant
c.952-2A>G
De novo
GEN367R072
stop_gained
c.787C>T
p.Arg263Ter
De novo
GEN367R073
frameshift_variant
c.272del
p.Leu91Ter
De novo
GEN367R074
inversion
De novo
GEN367R075
stop_gained
c.1282C>T
p.Arg428Ter
De novo
GEN367R076
splice_site_variant
c.665-1G>T
De novo
GEN367R077
missense_variant
c.355C>T
p.His119Tyr
Unknown
GEN367R078
missense_variant
c.376G>T
p.Asp126Tyr
Unknown
GEN367R079
missense_variant
c.398G>A
p.Arg133Gln
Unknown
GEN367R080
missense_variant
c.583G>A
p.Ala195Thr
Unknown
GEN367R081
stop_gained
c.613C>T
p.Arg205Ter
Unknown
GEN367R082
stop_gained
c.715G>T
p.Glu239Ter
Unknown
GEN367R083
missense_variant
c.777G>T
p.Leu259Phe
Unknown
GEN367R084
missense_variant
c.1373G>T
p.Arg458Met
Unknown
GEN367R085
missense_variant
c.1430_1431insA
p.Thr478TyrfsTer5
Unknown
GEN367R086
missense_variant
c.183G>C
p.Gln61His
Unknown
GEN367R087
missense_variant
c.468G>A
p.Met156Ile
Unknown
GEN367R088
missense_variant
c.169T>C
p.Ser57Pro
Unknown
GEN367R089
stop_gained
c.691C>T
p.Arg231Ter
De novo
GEN367R090
frameshift_variant
c.1464del
p.Ala489ProfsTer94
De novo
GEN367R091
splice_site_variant
c.1071+1G>A
De novo
GEN367R092
splice_site_variant
T>C
p.?
Familial
Multiplex
GEN367R093
splice_site_variant
A>G
p.?
Familial
Simplex
GEN367R094
splice_site_variant
G>A
p.?
Familial
Multiplex
GEN367R095
stop_gained
c.1639C>T
p.Gln547Ter
De novo
GEN367R096
missense_variant
c.1313G>A
p.Arg438His
De novo
GEN367R097
frameshift_variant
c.1190_1193del
p.Lys397ArgfsTer44
De novo
GEN367R098
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN367R099
frameshift_variant
c.1374delinsGG
p.Ile459AspfsTer17
De novo
GEN367R100
frameshift_variant
c.425dup
p.Asn142LysfsTer12
Unknown
Not maternal
GEN367R101
missense_variant
c.883C>T
p.Leu295Phe
De novo
GEN367R102
splice_site_variant
c.638-8_638-3del
De novo
GEN367R103
frameshift_variant
c.1221del
p.Lys407AsnfsTer35
De novo
GEN367R104
frameshift_variant
c.1643dup
p.Val549GlyfsTer15
De novo
Simplex
GEN367R105
stop_gained
c.691C>T
p.Arg231Ter
De novo
Simplex
GEN367R106
missense_variant
c.1634C>T
p.Ala545Val
Familial
Maternal
Simplex
GEN367R107
splice_site_variant
c.665-4del
De novo
Simplex
GEN367R108
missense_variant
c.1178C>G
p.Thr393Ser
Unknown
GEN367R109
splice_site_variant
c.1240-2A>G
Unknown
Simplex
GEN367R110
missense_variant
c.525G>A
p.Lys175=
De novo
GEN367R111
frameshift_variant
c.489_495del
p.Leu164AlafsTer9
De novo
GEN367R112
frameshift_variant
c.474del
p.Gly159ValfsTer7
De novo
GEN367R113
missense_variant
c.517G>T
p.Val173Phe
De novo
GEN367R114
stop_gained
c.787C>T
p.Arg263Ter
De novo
GEN367R115
frameshift_variant
c.986_995del
p.Ser329CysfsTer36
De novo
GEN367R116
missense_variant
c.1042G>A
p.Gly348Arg
De novo
GEN367R117
splice_site_variant
c.1071+1G>A
De novo
GEN367R118
frameshift_variant
c.1135dup
p.Ala379GlyfsTer9
Familial
Paternal
GEN367R119
frameshift_variant
c.1217_1220del
p.Lys406ArgfsTer44
De novo
GEN367R120
stop_gained
c.1282C>T
p.Arg428Ter
De novo
GEN367R121
stop_gained
c.1309C>T
p.Arg437Ter
Unknown
Not maternal
GEN367R122
stop_gained
c.1309C>T
p.Arg437Ter
De novo
GEN367R123
missense_variant
c.1400G>A
p.Arg467Gln
De novo
GEN367R124
frameshift_variant
c.1451dup
p.Ser485IlefsTer79
De novo
GEN367R125
splice_site_variant
c.208-28G>A
Familial
Paternal
Multiplex
GEN367R126
stop_gained
c.691C>T
p.Arg231Ter
De novo
Simplex
GEN367R127
stop_gained
c.2133C>A
p.Tyr711Ter
De novo
Simplex
GEN367R128
stop_gained
c.763C>T
p.Arg255Ter
Unknown
Not maternal
Simplex
GEN367R129
stop_gained
c.601C>T
p.Gln201Ter
De novo
Simplex
GEN367R130
frameshift_variant
c.1185dup
p.Lys398GlufsTer16
De novo
Simplex
GEN367R131
frameshift_variant
c.317dup
p.Lys107GlufsTer13
De novo
GEN367R132
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN367R133
splice_site_variant
c.1071+1G>A
De novo
GEN367R134
splice_site_variant
c.208-1G>A
Familial
Maternal
GEN367R135
splice_site_variant
c.208-28G>A
Familial
Maternal
GEN367R136
frameshift_variant
c.227dup
p.Met76IlefsTer12
Familial
Paternal
GEN367R137
splice_site_variant
c.208-1G>A
Unknown
GEN367R138
missense_variant
c.1409C>T
p.Pro470Leu
Unknown
GEN367R139
missense_variant
c.982C>T
p.Arg328Trp
Unknown
GEN367R140
missense_variant
c.1031T>A
p.Met344Lys
Unknown
GEN367R141
splice_site_variant
c.924+4_924+7del
Unknown
GEN367R142
frameshift_variant
c.775_776del
p.Leu259GlufsTer23
Unknown
GEN367R143
stop_gained
c.349C>T
p.Arg117Ter
Unknown
GEN367R144
stop_gained
c.367C>T
p.Gln123Ter
Unknown
GEN367R145
stop_gained
c.1325C>G
p.Ser442Ter
Unknown
GEN367R146
frameshift_variant
c.1243_1244dup
p.Lys416ThrfsTer36
Unknown
GEN367R147
missense_variant
c.1606C>T
p.Arg536Trp
Familial
Paternal
GEN367R148
missense_variant
c.1334C>T
p.Thr445Met
Unknown
GEN367R149
missense_variant
c.1852C>T
p.Arg618Trp
Unknown
GEN367R150
missense_variant
c.1879C>T
p.Arg627Trp
Unknown
GEN367R151
missense_variant
c.1879C>T
p.Arg627Trp
Unknown
GEN367R152
missense_variant
c.974G>A
p.Arg325His
Unknown
GEN367R153
splice_site_variant
c.1072-2A>G
De novo
GEN367R154
stop_gained
c.232C>T
p.Gln78Ter
Unknown
GEN367R155
splice_site_variant
c.1099-2A>G
Unknown
GEN367R156
frameshift_variant
c.570_573del
p.Gln190HisfsTer3
Unknown
GEN367R157
frameshift_variant
c.572_575del
p.Ala191GlyfsTer2
Unknown
GEN367R158
stop_gained
c.586C>T
p.Arg196Ter
Unknown
GEN367R159
stop_gained
c.691C>T
p.Arg231Ter
Unknown
GEN367R160
stop_gained
c.763C>T
p.Arg255Ter
Unknown
GEN367R161
missense_variant
c.860A>T
p.Asp287Val
Unknown
GEN367R162
stop_gained
c.1035G>A
p.Met345Ile
Unknown
GEN367R163
frameshift_variant
c.1219_1222del
p.Lys407HisfsTer34
Unknown
GEN367R164
frameshift_variant
c.1350dup
p.Leu451AlafsTer2
Unknown
GEN367R165
frameshift_variant
c.1400dup
p.His467GlnfsTer9
Unknown
GEN367R166
copy_number_loss
Unknown
GEN367R167
copy_number_loss
Unknown
GEN367R168
copy_number_loss
Unknown
GEN367R169
copy_number_loss
Unknown
GEN367R170
stop_gained
c.361C>T
p.Gln121Ter
Unknown
GEN367R171
stop_gained
c.613C>T
p.Arg205Ter
Unknown
GEN367R172
stop_gained
c.763C>T
p.Arg255Ter
Unknown
GEN367R173
missense_variant
c.878T>A
p.Ile293Asn
Unknown
GEN367R174
inframe_indel
c.914_919del
p.Leu305_Gln307delinsTer
Unknown
GEN367R175
stop_gained
c.691C>T
p.Arg231Ter
Unknown
GEN367R176
missense_variant
c.1028A>C
p.Asp343Ala
Unknown
GEN367R177
missense_variant
c.1030A>T
p.Met344Leu
Unknown
GEN367R178
splice_site_variant
c.1522G>A
p.Gly508Ser
Unknown
GEN367R179
stop_gained
c.349C>T
p.Arg117Ter
Unknown
GEN367R180
missense_variant
c.395A>T
p.Asp132Val
Unknown
GEN367R181
frameshift_variant
c.398del
p.Asp133ValfsTer8
Unknown
GEN367R182
splice_site_variant
c.489+2T>C
Unknown
GEN367R183
stop_gained
c.613C>T
p.Arg205Ter
Unknown
GEN367R184
splice_region_variant
c.654_658del
p.Phe219ValfsTer10
Unknown
GEN367R185
frameshift_variant
c.797del
p.Phe266SerfsTer14
Unknown
GEN367R186
missense_variant
c.883C>T
p.Leu295Phe
Unknown
GEN367R187
splice_site_variant
c.952_955del
p.Tyr318GlyfsTer40
Unknown
GEN367R188
stop_gained
c.1423C>T
p.Gln475Ter
Unknown
GEN367R189
copy_number_loss
De novo
Simplex
GEN367R190
missense_variant
c.1046G>A
p.Cys349Tyr
De novo
Simplex
GEN367R191
missense_variant
c.1028A>G
p.Asp343Gly
Unknown
Unknown
GEN367R192
stop_gained
c.957C>G
p.Tyr319Ter
De novo
Simplex
GEN367R193
copy_number_loss
De novo
GEN367R194
copy_number_loss
De novo
GEN367R195
translocation
De novo
GEN367R196
stop_gained
c.322C>T
p.Arg108Ter
Unknown
GEN367R197
stop_gained
c.349C>T
p.Arg117Ter
Familial
Paternal
GEN367R198
stop_gained
c.349C>T
p.Arg117Ter
De novo
GEN367R199
stop_gained
c.763C>T
p.Arg255Ter
Unknown
GEN367R200
frameshift_variant
c.263_264del
p.Ser88CysfsTer2
De novo
GEN367R201
frameshift_variant
c.270_274del
p.Leu91GlnfsTer7
De novo
GEN367R202
frameshift_variant
c.477del
p.Tyr159Ter
De novo
GEN367R203
frameshift_variant
c.675_676del
p.Cys226PhefsTer4
De novo
GEN367R204
frameshift_variant
c.782del
p.Leu261GlnfsTer28
De novo
GEN367R205
frameshift_variant
c.1004del
p.Gly335GlufsTer33
Unknown
Not maternal
GEN367R206
frameshift_variant
c.1008dup
p.Pro337AlafsTer3
De novo
GEN367R207
frameshift_variant
c.1033del
p.Trp345GlyfsTer23
De novo
GEN367R208
frameshift_variant
c.1333dup
p.Thr445AsnfsTer4
De novo
GEN367R209
frameshift_variant
c.1464del
p.Ala489ProfsTer94
De novo
GEN367R210
frameshift_variant
c.1978del
p.Ser660ProfsTer43
De novo
GEN367R211
splice_site_variant
c.328-1G>T
De novo
GEN367R212
splice_site_variant
c.665-2A>G
De novo
GEN367R213
splice_region_variant
c.638-9_638-5del
De novo
GEN367R214
splice_site_variant
c.924+4_924+7del
De novo
GEN367R215
splice_site_variant
c.1240-2A>G
De novo
GEN367R216
splice_site_variant
c.1240-1_1240insTAA
p.Arg413_Glu414insTer
De novo
GEN367R217
missense_variant
c.503G>A
p.Gly168Asp
De novo
GEN367R218
missense_variant
c.764G>A
p.Arg255Gln
Unknown
GEN367R219
missense_variant
c.860A>T
p.Asp287Val
De novo
GEN367R220
missense_variant
c.914T>G
p.Ile305Arg
De novo
GEN367R221
missense_variant
c.972T>A
p.Ser324Arg
De novo
GEN367R222
inframe_deletion
c.1098G>T
p.Glu366Asp
De novo
GEN367R223
missense_variant
c.1384T>C
p.Tyr462His
De novo
GEN367R224
missense_variant
c.1400G>A
p.Arg467Gln
De novo
GEN367R225
missense_variant
c.1457G>A
p.Gly486Asp
De novo
GEN367R226
stop_gained
c.1309C>T
p.Arg437Ter
Unknown
GEN367R227
stop_gained
c.799C>T
p.Gln267Ter
De novo
GEN367R228
splice_region_variant
c.638-9_638-5del
De novo
GEN367R229
stop_gained
c.936T>A
p.Cys312Ter
De novo
GEN367R230
splice_site_variant
c.924+1G>C
De novo
GEN367R231
frameshift_variant
c.1270del
p.His424IlefsTer27
De novo
GEN367R232
copy_number_loss
De novo
GEN367R233
frameshift_variant
c.208dup
p.Arg70LysfsTer9
De novo
GEN367R234
stop_gained
c.1399C>T
p.Arg467Ter
De novo
GEN367R235
stop_gained
c.763C>T
p.Arg255Ter
Unknown
GEN367R236
stop_gained
c.613C>T
p.Arg205Ter
Unknown
GEN367R237
stop_gained
c.1669C>T
p.Gln557Ter
De novo
GEN367R238
synonymous_variant
c.1536G>A
p.Ser512%3D
Unknown
GEN367R239
stop_gained
c.1399C>T
p.His467Tyr
Unknown
GEN367R240
frameshift_variant
c.250dup
p.Leu84ProfsTer7
De novo
GEN367R241
splice_site_variant
c.328-2A>G
De novo
GEN367R242
stop_gained
c.349C>T
p.Arg117Ter
De novo
GEN367R243
frameshift_variant
c.451_466del
p.Glu151Ter
De novo
GEN367R244
frameshift_variant
c.572_575del
p.Ala191GlyfsTer2
De novo
GEN367R245
frameshift_variant
c.572_575del
p.Ala191GlyfsTer2
De novo
GEN367R246
stop_gained
c.613C>T
p.Arg205Ter
De novo
GEN367R247
stop_gained
c.657C>A
p.Tyr219Ter
De novo
GEN367R248
stop_gained
c.691C>T
p.Arg231Ter
De novo
GEN367R249
stop_gained
c.705_707delinsAC
p.Asn235LysfsTer6
De novo
GEN367R250
missense_variant
c.848T>G
p.Ile283Ser
De novo
GEN367R251
splice_site_variant
c.956_959del
p.Arg319LeufsTer39
Unknown
GEN367R252
stop_gained
c.1035G>A
p.Met345Ile
De novo
GEN367R253
frameshift_variant
c.1400dup
p.His467GlnfsTer9
De novo
GEN367R254
frameshift_variant
c.1406del
p.Phe469SerfsTer114
Unknown
GEN367R255
stop_gained
c.1653C>A
p.Cys551Ter
De novo
GEN367R256
copy_number_loss
Unknown
GEN367R257
copy_number_loss
Unknown
GEN367R258
frameshift_variant
c.1031_1037del
p.Met344ThrfsTer22
Unknown
GEN367R259
missense_variant
c.1730T>A
p.Val577Asp
Unknown
GEN367R260
missense_variant
c.214C>G
p.Pro72Ala
Unknown
GEN367R261
frameshift_variant
c.1316del
p.Asp439AlafsTer3
De novo
GEN367R262
stop_gained
c.1399C>T
p.His467Tyr
De novo
Simplex
GEN367R263
stop_gained
c.586C>T
p.Arg196Ter
De novo
Simplex
GEN367R264
frameshift_variant
c.572_575del
p.Lys191ThrfsTer6
De novo
Simplex
GEN367R265
splice_region_variant
c.665-9_665-5del
De novo
GEN367R266
frameshift_variant
c.848dup
p.Asn283LysfsTer6
De novo
Simplex
GEN367R267
splice_site_variant
c.956G>A
p.Arg319Gln
De novo
GEN367R268
copy_number_loss
De novo
Simplex
GEN367R269
stop_gained
c.613C>T
p.Arg205Ter
Unknown
Simplex
GEN367R270
missense_variant
c.1028A>G
p.Asp343Gly
De novo
GEN367R271
stop_gained
c.349C>T
p.Arg117Ter
De novo
Simplex
GEN367R272
stop_gained
c.1764del
p.His590MetfsTer2
De novo
Simplex
GEN367R273
stop_gained
c.1159C>T
p.Gln387Ter
De novo
Multiplex
GEN367R274
stop_gained
c.1309C>T
p.Arg437Ter
De novo
Simplex
GEN367R275
copy_number_loss
p.Gly4_Asn109del
De novo
Simplex
GEN367R276
frameshift_variant
c.948_949insGG
p.Phe317GlyfsTer43
Unknown
GEN367R277
frameshift_variant
c.894del
p.Phe299LeufsTer60
Unknown
Simplex
GEN367R278
frameshift_variant
c.539dup
p.Ile181AsnfsTer19
De novo
Simplex
No Common Variants Available
21
Deletion-Duplication
1
21
Deletion-Duplication
9
Summary Statistics:
# of Reports: 1
# of Models: 2
External Links
Model Summary
Dyrk1a knockout in zebrafish causes reductioni n size in various brain regions including the telencephalon, cerebellum and optic tectum.
References
Primary
Zebrafish knockout of Down syndrome gene, DYRK1A, shows social impairments relevant to autism.
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Dyrk1aa knock out fish were generated using a TALEN pair targeting exon 5 leading to the introduction of an early stop codon following a 7 bp deletion. This leads to a truncation of the protein, including most of the kinase domain and loss of function.In vitro transcribed RNA of the TALEN pair was microinjected into 1~2 cell stage fertilized zebrafish eggs and a stable mutant line called dyrk1aakrb1 was obtained, grown till adulthood (4 months). In-crossed to obtain homozygosity.
Allele Type: Targeted(knockout)
Strain of Origin:
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source: Cheol-Hee Kim
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Dyrk1aa knock out fish were generated using a TALEN pair targeting exon 5 leading to the introduction of an early stop codon following a 7 bp deletion. This leads to a truncation of the protein, including most of the kinase domain and loss of function.In vitro transcribed RNA of the TALEN pair was microinjected into 1~2 cell stage fertilized zebrafish eggs and a stable mutant line called dyrk1aakrb1 was obtained, grown till adulthood (4 months), maintained using out-crosses with wt fish.
Allele Type: Targeted(knockout)
Strain of Origin:
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source: Cheol-Hee Kim
Cerebellar morphology: corpus cerebelli1
Decreased
View More
Description: Dyrk1a KO zebrafish have pronounced size reduction in the corpus cerebelli
Histology
7 months post fertilization
Decreased
View More
Description: Dyrk1a KO zebrafish display microcephaly
Histology
7 months post fertilization
Morphology of telencephalon1
Decreased
View More
Description: Dyrk1a KO zebrafish have pronounced size reduction in the telencephalon
Histology
7 months post fertilization
Morphology of optic tectum1
Decreased
View More
Description: Dyrk1a KO zebrafish have pronounced size reduction in the optic tectum
Histology
7 months post fertilization
Increased
View More
Description: Dyrk1a KO zebrafish have increased apoptotic cell death in the brain which authors indicate gives rise to microcephaly
Expression of cleaved caspase-3 (cc3)
3 weeks post fertilization
Neuronal activation following behavioral stimulation: c-fos levels1
Decreased
View More
Description: c-fos levels were reduced in Dyrk1a KO zebrafish ventral hypothalamic region compared to WT following handling stress
In situ hybridization (ish)
7 months post fertilization
Increased
View More
Description: Dyrk1a KO zebrafish display decrease in preference for aggregation or social cohesion in the shoaling assay where they do not exhibit formation of groups , aggregation or shoals
Shoaling assay
7 months post fertilization
Decreased
View More
Description: Dyrk1a KO zebrafish show reduced social interaction in the parition test in tank, where the social cues are fish behind a transparent acrylic wall
Partition test in tank
7 months post fertilization
Decreased
View More
Description: Dyrk1a KO zebrafish have reduced anxiety in the novel tank diving test as they spend more time in the top and middle zones of the tank and also show reduced freezing, compared to wt
Exp Paradigm: Time spent in the top, time spent in the middle of tank and freezing time
Novel tank diving test
7 months post fertilization
Decreased
View More
Description: Dyrk1a KO zebrafish showed reduced expression of the stress hormone corticotrophin-releasing hormone mRNA in the preoptic area (mammalian homolog of paraventricular nucleus)
In situ hybridization (ish)
7 months post fertilization
Locomotor activity in diurnal cycle1
No change
General observations
5-7 dpf
Developmental trajectory1
No change
General observations
4 months post fertilization
No change
General observations
7 months post fertilization
No change
Body length measurement
7 months post fertilization
No change
In situ hybridization (ish)
24 hpf
No change
In situ hybridization (ish)
48 hpf
No change
In situ hybridization (ish)
48 hpf
General locomotor activity1
No change
Novel tank diving test
7 months post fertilization
No change
General observations
7 months post fertilization
No change
Optomotor response to dark flash pulses
6 dpf
Not Reported:
Communications, Immune response, Learning & memory, Maternal behavior, Physiological parameters, Repetitive behavior, Seizure, Sensory
Locomotor activity in diurnal cycle1
No change
General observations
5-7 dpf
No change
Optomotor response to dark flash pulses
6 dpf
Not Reported:
Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Summary Statistics:
Total Interactions: 55
Total Publications: 21
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ABLIM1
actin binding LIM protein 1
3983
O14639
Protein microarray; IP/WB
Schneider P , et al. 2015
C10ORF71
Uncharacterized protein C10orf71
118461
Q711Q0-3
IP; LC-MS/MS
Huttlin EL , et al. 2015
CAPN1
Calpain-1 catalytic subunit
823
P07384
in vitro proteolysis assay; IP/WB
Jin N , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
ChIP-chip
Subtil-Rodrguez A , et al. 2013
DCAF7
DDB1 and CUL4 associated factor 7
10238
P61962
IP; MS
Miyata Y and Nishida E 2011
DCAF7
DDB1 and CUL4 associated factor 7
10238
P61962
IP; LC-MS/MS
Huttlin EL , et al. 2015
DCHS1
dachsous 1 (Drosophila)
8642
Q96JQ0
IP; LC-MS/MS
Li J , et al. 2016
EEF1G
eukaryotic translation elongation factor 1 gamma
1937
P26641
IP; LC-MS/MS
Li J , et al. 2016
FAM117B
family with sequence similarity 117, member B
150864
Q6P1L5
IP; LC-MS/MS
Huttlin EL , et al. 2015
FAM53C
family with sequence similarity 53, member C
51307
Q9NYF3
IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP
Ascano M Jr , et al. 2012
FNTB
Protein farnesyltransferase subunit beta
100529261
P49356
IP; LC-MS/MS
Huttlin EL , et al. 2015
GLCCI1
glucocorticoid induced transcript 1
113263
Q86VQ1
IP; LC-MS/MS
Li J , et al. 2016
HISTIH2B3
histone cluster 1, H3a
8350
P68431
in vitro kinase assay; MS
Himpel S , et al. 2000
histone H3
Histone H3.1
8350
P68431
IP/WB; GST
Jang SM , et al. 2014
IFI44
Interferon-induced protein 44
10561
Q8TCB0
ChIP
Jang SM , et al. 2014
IL1a
interleukin 1, alpha
3552
P01583
ChIP
Jang SM , et al. 2014
IL6
interleukin 6 (interferon, beta 2)
3569
B4DVM1
ChIP
Jang SM , et al. 2014
IL8
interleukin 8
3576
P10145
ChIP
Jang SM , et al. 2014
LRCH3
leucine-rich repeats and calponin homology (CH) domain containing 3
84859
Q96II8
IP; LC-MS/MS
Huttlin EL , et al. 2015
LZTS2
leucine zipper, putative tumor suppressor 2
84445
Q9BRK4
IP; LC-MS/MS
Huttlin EL , et al. 2015
LZTS2
leucine zipper, putative tumor suppressor 2
84445
Q9BRK4
IP; LC-MS/MS
Li J , et al. 2016
LZTS3
leucine zipper, putative tumor suppressor family member 3
9762
O60299
IP; LC-MS/MS
Li J , et al. 2016
MAPT
microtubule-associated protein tau
4137
P10636
in vitro kinase assay
Jin N , et al. 2015
NFATC1
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
4772
B5B2M8
Genome-wide RNAi screen; IP
Gwack Y , et al. 2006
NUP107
nucleoporin 107kDa
57122
P57740
IP; LC-MS/MS
Li J , et al. 2016
NUP214
nucleoporin 214kDa
8021
P35658
IP; LC-MS/MS
Li J , et al. 2016
NUP98
nucleoporin 98kDa
4928
P52948
IP; LC-MS/MS
Li J , et al. 2016
NXF2
Nuclear RNA export factor 2
56001
Q9GZY0
IP; LC-MS/MS
Huttlin EL , et al. 2015
POM121
POM121 membrane glycoprotein
9883
Q96HA1
IP; LC-MS/MS
Li J , et al. 2016
PRKACB
protein kinase, cAMP-dependent, catalytic, beta
NM_207578
P22694
IP; LC-MS/MS
Huttlin EL , et al. 2015
RCAN1
regulator of calcineurin 1
1827
P53805
in vitro kinase assay
Jung MS , et al. 2011
RFPL2
Ret finger protein-like 2
10739
O75678-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
RNF169
ring finger protein 169
254225
Q8NCN4
IP; LC-MS/MS
Li J , et al. 2016
SEC16A
SEC16 homolog A (S. cerevisiae)
9919
O15027
IP; LC-MS/MS
Li J , et al. 2016
TNFa
Tumor necrosis factor, membrane form
7124
P01375
ChIP
Jang SM , et al. 2014
TNFAIP6
Tumor necrosis factor-inducible gene 6 protein
7130
P98066
ChIP
Jang SM , et al. 2014
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
TRMT61B
tRNA methyltransferase 61 homolog B (S. cerevisiae)
55006
Q9BVS5
IP; LC-MS/MS
Li J , et al. 2016
TROAP
trophinin associated protein
10024
Q12815
IP; LC-MS/MS
Li J , et al. 2016
VDAC2
voltage-dependent anion channel 2
7417
P45880
IP; LC-MS/MS
Li J , et al. 2016
WASL
Wiskott-Aldrich syndrome-like
8976
O00401
in vitro kinase assay
Park J , et al. 2012
GluN2A
Glutamate receptor ionotropic, NMDA 2A
24409
Q00959
GST; IP/WB; in vitro kinase assay
Grau C , et al. 2014
Amph
amphiphysin
60668
O08838
in vitro kinase assay; Ligand blotting; in vivo kinase assay
Murakami N , et al. 2006
Ap1b1
adaptor-related protein complex 1, beta 1 subunit
29663
P52303
in vitro kinase assay; MS; IP
Murakami N , et al. 2012
Ap2a2
adaptor-related protein complex 2, alpha 2 subunit
81637
Q66HM2
IP; MS; in vitro kinase assay
Murakami N , et al. 2012
Dnm1
dynamin 1-like
114114
O35303
in vitro kinase assay
Chen-Hwang MC , et al. 2002
Map1a
microtubule-associated protein 1A
25152
P34926
in vitro kinase assay; MS; IP
Murakami N , et al. 2012
Map2
microtubule-associated protein 2
25595
Q64715
IP; MS; in vitro kinase assay
Murakami N , et al. 2012
SNAP91
synaptosomal-associated protein 91
65178
Q05140
IP; MS; in vitro kinase assay
Murakami N , et al. 2012
Synj1
synaptojanin 1
85238
Q62910
in vitro kinase assay; MS; in vitro phosphatase assay; IP/WB
Adayev T , et al. 2006
Synj
synaptojanin
37517
Q5U0V7
IP/WB; Immunohistochemistry
Chen CK , et al. 2014
ctnnd1
catenin (cadherin-associated protein), delta 1
100101665
B2GUD2
Electrophysiology; IP
Hong JY , et al. 2012
zbtb33
zinc finger and BTB domain containing 33
398248
Q8UVQ4
Electrophysiology; IP
Hong JY , et al. 2012
FOXO1
forkhead box O1
2308
Q12778
in vitro kinase assay; MS; Immunofluorescence; IP
Woods YL , et al. 2001