Summary Statistics:
ASD Reports: 36
Recent Reports: 2
Annotated variants: 73
Associated CNVs: 11
Evidence score: 4
Gene Score: 3
Relevance to Autism
De novo missense variants in the DYNC1H1 gene have previously been identified in ASD cases (De Rubeis et al., 2014; Iossifov et al., 2014). An additional de novo missense variant in this gene was identified by whole genome sequencing in an ASD proband from a simplex family as part of the MSSNG initiative in Yuen et al., 2017. Based on the discovery of multiple de novo missense variants in ASD cases, a z-score > 2.0 for missense mutations, and a higher-than expected mutation rate (a false discovery rate < 15%), DYNC1H1 was determined to be an ASD candidate gene in Yuen et al., 2017. Whole exome sequencing in 116 ASD parent-proband trios as part of the University of Illinois at Chicago ACE project identified a de novo nonsense variant in DYNC1H1 in one ASD proband (Chen et al., 2017). A de novo protein-truncating variant was identified in DYNC1H1 in an ASD proband from the Autism Sequencing Consortium in Satterstrom et al., 2020; seven protein-truncating variants in this gene were observed in case samples from the Danish iPSYCH study in this same report. Furthermore, TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified DYNC1H1 as a candidate gene with a false discovery rate (FDR) 0.01. A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified DYNC1H1 as a gene reaching exome-wide significance (P < 2.5E-06); association of DYNC1H1 with ASD risk in this analysis was found to be driven both by de novo variants and rare inherited loss-of-function variants transmitted from unaffected parents to affected offspring. Mutations in the DYNC1H1 gene are associated with autosomal dominant mental retardation-13 (MRD13; OMIM 614563), a form of intellectual disability associated with variable neuronal migration defects resulting in cortical malformations (Vissers et al., 2010; Willemsen et al., 2012).
Molecular Function
This gene encodes a member of the cytoplasmic dynein heavy chain family. Dyneins are a group of microtubule-activated ATPases that function as molecular motors. Mutations in the DYNC1H1 gene are associated with autosomal dominant mental retardation-13 (MRD13; OMIM 614563), a form of intellectual disability associated with variable neuronal migration defects resulting in cortical malformations (Vissers et al., 2010; Willemsen et al., 2012).
References
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Diagnostic exome sequencing of syndromic epilepsy patients in clinical practice.
ASD, DD, epilepsy/seizures, microcephaly
Support
Epilepsy/seizures
DD, ID
Support
The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing
ASD
Support
Mutations in DYNC1H1 cause severe intellectual disability with neuronal migration defects.
ID
Support
Rapid assessment of the temporal function and phenotypic reversibility of neurodevelopmental disorder risk genes in Caenorhabditis elegans
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
DYNC1H1-related disorders: A description of four new unrelated patients and a comprehensive review of previously reported variants
Autosomal dominant lower extremity-predominant spi
ASD, ID, epilepsy/seizures
Support
A de novo paradigm for mental retardation.
ID
Support
Epilepsy/seizures
DD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID, epilepsy/seizures, microcephaly
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Diagnostic yield of next-generation sequencing in 87 families with neurodevelopmental disorders
ID
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
ASD
OCD, ID, epilepsy/seizures
Support
De Novo Variants in the DYNC1H1 Gene Associated With Infantile Spasms
DD, epilepsy/seizures
Support
Whole-exome sequencing identifies a novel de novo mutation in DYNC1H1 in epileptic encephalopathies.
Epilepsy/seizures
West syndrome
Support
Integrating de novo and inherited variants in 42
ASD
Support
The Clinical and Genetic Features of Co-occurring Epilepsy and Autism Spectrum Disorder in Chinese Children.
ASD, epilepsy/seizures
Support
ID, epilepsy/seizures
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
ID, epilepsy/seizures
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Comprehensive genome sequencing analyses identify novel gene mutations and copy number variations associated with infant developmental delay or intellectual disability (DD/ID)
DD, ID
Recent Recommendation
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
GEN888R001
missense_variant
c.2467G>T
p.Val823Leu
De novo
GEN888R002
missense_variant
c.6698C>T
p.Ala2233Val
De novo
GEN888R003
missense_variant
c.7718A>G
p.Asp2573Gly
De novo
GEN888R004
missense_variant
c.12797A>T
p.Asn4266Ile
De novo
GEN888R005
missense_variant
c.12214G>A
p.Gly4072Ser
De novo
Simplex
GEN888R006
missense_variant
c.9073G>A
p.Glu3025Lys
De novo
Simplex
GEN888R007
missense_variant
c.11465A>C
p.His3822Pro
De novo
Simplex
GEN888R008
missense_variant
c.4552G>A
p.Glu1518Lys
De novo
GEN888R009
missense_variant
c.10174A>G
p.Met3392Val
De novo
Simplex
GEN888R010
missense_variant
c.925C>T
p.Arg309Cys
De novo
Simplex
GEN888R011
stop_gained
c.12315G>A
p.Trp4105Ter
De novo
Simplex
GEN888R012
missense_variant
c.10573C>T
p.Arg3525Cys
De novo
GEN888R013
missense_variant
c.2363A>G
p.Tyr788Cys
Familial
Simplex
GEN888R014
missense_variant
c.6994C>T
p.Arg2332Cys
De novo
GEN888R015
missense_variant
c.13088A>C
p.Lys4363Thr
De novo
Simplex
GEN888R016
splice_site_variant
c.3960+1G>A
De novo
GEN888R017
stop_gained
c.12315G>A
p.Trp4105Ter
De novo
Simplex
GEN888R018
synonymous_variant
c.3072A>G
p.Thr1024=
De novo
Simplex
GEN888R019
splice_site_variant
c.4396-1G>C
De novo
Multiplex
GEN888R020
missense_variant
c.3347T>C
p.Val1116Ala
De novo
GEN888R021
missense_variant
c.4532C>T
p.Pro1511Leu
De novo
GEN888R022
missense_variant
c.4234C>T
p.His1412Tyr
De novo
GEN888R023
missense_variant
c.10973G>A
p.Gly3658Glu
De novo
GEN888R024
missense_variant
c.11084G>A
p.Arg3695Gln
De novo
GEN888R025
missense_variant
c.9209C>T
p.Pro3070Leu
De novo
Simplex
GEN888R026
missense_variant
c.4741A>C
p.Lys1581Gln
Unknown
GEN888R027
missense_variant
c.5096A>G
p.Asn1699Ser
Unknown
GEN888R028
missense_variant
c.9418C>T
p.Arg3140Trp
Unknown
GEN888R029
missense_variant
c.9521G>A
p.Arg3174His
Unknown
GEN888R030
missense_variant
c.3351C>G
p.Asn1117Lys
De novo
GEN888R031
missense_variant
c.5884C>T
p.Arg1962Cys
De novo
GEN888R032
missense_variant
c.10213A>C
p.Met3405Leu
De novo
Multiplex (dizygotic twins)
GEN888R033
missense_variant
c.3278T>C
p.Phe1093Ser
De novo
GEN888R034
frameshift_variant
c.4462dup
p.Arg1488ProfsTer5
Familial
Maternal
GEN888R035
synonymous_variant
c.6258T>C
p.Tyr2086%3D
Unknown
GEN888R036
synonymous_variant
c.9192C>T
p.Val3064%3D
Unknown
GEN888R037
missense_variant
c.3180A>C
p.Leu1060Phe
De novo
Simplex
GEN888R038
inframe_deletion
c.591_593del
p.Gln198del
Familial
Maternal
GEN888R039
missense_variant
c.1113A>T
p.Lys371Asn
De novo
Simplex
GEN888R040
synonymous_variant
c.3072A>G
p.Thr1024%3D
De novo
Simplex
GEN888R041
inframe_insertion
c.3572_3580dup
p.Arg1191_Gly1193dup
De novo
Simplex
GEN888R042
frameshift_variant
c.11886_11887del
p.Asp3962GlufsTer14
De novo
Simplex
GEN888R043
missense_variant
c.12560A>G
p.His4187Arg
De novo
Simplex
GEN888R044
missense_variant
c.584A>T
p.His195Leu
De novo
GEN888R045
missense_variant
c.4079G>A
p.Arg1360Gln
De novo
GEN888R046
missense_variant
c.6110G>C
p.Arg2037Pro
De novo
GEN888R047
missense_variant
c.6272G>A
p.Arg2091Gln
De novo
GEN888R048
missense_variant
c.6340G>A
p.Glu2114Lys
De novo
GEN888R049
missense_variant
c.6410T>C
p.Leu2137Pro
De novo
GEN888R050
stop_gained
c.7474C>T
p.Arg2492Ter
De novo
GEN888R051
splice_site_variant
c.10079+1G>C
De novo
GEN888R052
frameshift_variant
c.10871_10874del
p.Glu3624ValfsTer3
De novo
GEN888R053
frameshift_variant
c.10924_10927dup
p.Pro3643ArgfsTer11
De novo
GEN888R054
synonymous_variant
c.13500C>T
p.Gly4500%3D
De novo
GEN888R055
missense_variant
c.56C>T
p.Ser19Leu
De novo
GEN888R056
missense_variant
c.1832G>A
p.Arg611His
De novo
GEN888R057
missense_variant
c.12950C>T
p.Thr4317Met
De novo
GEN888R058
stop_gained
c.13273C>T
p.Gln4425Ter
De novo
GEN888R059
missense_variant
c.12449C>T
p.Pro4150Leu
De novo
Multiplex
GEN888R060
stop_gained
c.12910G>T
p.Glu4304Ter
De novo
Simplex
GEN888R061
missense_variant
c.806G>A
p.Gly269Glu
Unknown
Multiplex
GEN888R062
missense_variant
c.4216G>A
p.Glu1406Lys
Unknown
Simplex
GEN888R063
missense_variant
c.10232C>A
p.Pro3411His
Unknown
Simplex
GEN888R064
missense_variant
c.1103G>C
p.Arg368Pro
De novo
Simplex
GEN888R065
missense_variant
c.10268C>T
p.Ala3423Val
De novo
Simplex
GEN888R066a
missense_variant
c.7463G>A
p.Arg2488His
Familial
Both parents
Simplex
GEN888R067a
splice_region_variant
c.11691-4G>T
Familial
Paternal
Simplex
GEN888R067b
missense_variant
c.11858C>T
p.Ala3953Val
Familial
Maternal
Simplex
GEN888R068
missense_variant
c.3543G>C
p.Lys1181Asn
De novo
GEN888R069
missense_variant
c.4868G>A
p.Arg1623Gln
De novo
GEN888R070
missense_variant
c.11074C>G
p.Leu3692Val
Familial
Paternal
Simplex
GEN888R071
missense_variant
c.7059G>C
p.Leu2353Phe
Familial
Paternal
GEN888R072
missense_variant
c.10016G>A
p.Arg3339His
De novo
Simplex
No Common Variants Available
14
Deletion-Duplication
11
14
Deletion-Duplication
4
No Animal Model Data Available
No Interactions Available