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Relevance to Autism

De novo missense variants that were predicted in silico to be damaging were identified in the DPYSL2 gene in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014) and the Simons Simplex Collection (Iossifov et al., 2014). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as a novel cohort of 262 Japanese ASD trios, in Takata et al., 2018 identified DPYSL2 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05). Multiple studies have reported an association between the DPYSL2 gene and schizophrenia (Nakata et al., 2003; Fallin et al., 2005; Fallin et al., 2011; Liu et al., 2014; Lee et al., 2015), as well as evidence suggesting that the DPYSL2 gene links mTOR signaling and schizophrenia (Liu et al., 2014; Pham et al., 2016).

Molecular Function

This gene encodes a member of the collapsin response mediator protein family. Collapsin response mediator proteins form homo- and hetero-tetramers and facilitate neuron guidance, growth and polarity. The encoded protein promotes microtubule assembly and is required for Sema3A-mediated growth cone collapse, and also plays a role in synaptic signaling through interactions with calcium channels. This gene has been implicated in multiple neurological disorders, and hyperphosphorylation of the encoded protein may play a key role in the development of Alzheimer's disease.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Positive Association
Linkage and association on 8p21.2-p21.1 in schizophrenia.
SCZ
Positive Association
Bipolar I disorder and schizophrenia: a 440-single-nucleotide polymorphism screen of 64 candidate genes among Ashkenazi Jewish case-parent trios.
SCZ
Positive Association
The human dihydropyrimidinase-related protein 2 gene on chromosome 8p21 is associated with paranoid-type schizophrenia.
SCZ
Positive Association
Changes in Dpysl2 expression are associated with prenatally stressed rat offspring and susceptibility to schizophrenia in humans.
SCZ
Positive Association
Functional variants in DPYSL2 sequence increase risk of schizophrenia and suggest a link to mTOR signaling.
SCZ
Negative Association
A two-stage case-control association study of the dihydropyrimidinase-like 2 gene (DPYSL2) with schizophrenia in Japanese subjects.
SCZ
Negative Association
An investigation of the dihydropyrimidinase-like 2 (DPYSL2) gene in schizophrenia: genetic association study and expression analysis.
SCZ
Support
CRMP2 mediates Sema3F-dependent axon pruning and dendritic spine remodeling.
ASD
Support
The DPYSL2 gene connects mTOR and schizophrenia.
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Schizophrenia
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo non-synonymous DPYSL2 (CRMP2) variants in two patients with intellectual disabilities and documentation of functional relevance through zebrafish rescue and cellular transfection experiments
DD
ID, epilepsy/seizures
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Recent Recommendation
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.
Recent Recommendation
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN998R001 
 missense_variant 
 c.1312C>A 
 p.His438Asn 
 De novo 
  
  
 GEN998R002 
 missense_variant 
 c.1801C>T 
 p.Arg601Cys 
 De novo 
  
 Simplex 
 GEN998R003 
 missense_variant 
 c.1028G>A 
 p.Arg343His 
 De novo 
  
 Simplex 
 GEN998R004 
 missense_variant 
 c.1693C>T 
 p.His565Tyr 
 De novo 
  
 Simplex 
 GEN998R005 
 missense_variant 
 c.42C>A 
 p.Ser14Arg 
 De novo 
  
  
 GEN998R006 
 synonymous_variant 
 c.606C>T 
 p.Gly202%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Deletion
 2
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 5
 
8
Duplication
 3
 
8
Duplication
 5
 
8
Duplication
 2
 
8
Duplication
 2
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Deletion
 3
 
8
Duplication
 1
 

No Animal Model Data Available

 

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