HELP     Sign In
Search

Relevance to Autism

Maroni et al., 2025 identified a cohort of 16 individuals through collaborating clinicians and GeneMatcher with monoallelic DOT1L variants presenting with a variable neurodevelopmental disorder characterized by language delay (13/16), motor delay (9/16), intellectual disability (4/16), a diagnosis of ASD (4/16), seizures/epilepsy (3/16), and craniofacial anomalies (14/16); additional functional studies in this report identified patient-specific missense variants with either decreased (the newly identified p.Asp157Asn variant) or increased (the previously reported p.Glu123Lys variant) methyltransferase activity, while heterozygous forebrain-specific Dot1l conditional knockout mice demonstrated altered early vocalization development in both male and female pups, as well as a sex-specific sociability deficit in the three-chamber test in female Dot1l cKO mice. A previous study (Nil et al., 2023) had reported nine unrelated individuals with seven different de novo heterozygous missense variants in DOT1L through the Undiagnosed Disease Network (UDN), the SickKids Complex Care genomics project, and GeneMatcher presenting with some degree of global developmental delay/intellectual disability and at least one major congenital anomaly in most individuals; subsequent functional assessment of DOT1L missense variants in Drosophila and human cells in this report demonstrated gain-of-function effects in flies and increased H3K79 methylation levels in flies and human cells. A number of de novo DOT1L variants, including two de novo loss-of-function variants in probands from the Simons Simplex Collection, have been reported in ASD probands (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022; Fu et al., 2022).

Molecular Function

The protein encoded by this gene is a histone methyltransferase that methylates lysine-79 of histone H3. It is inactive against free core histones, but shows significant histone methyltransferase activity against nucleosomes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Loss of DOT1L disrupts neuronal transcription and leads to a neurodevelopmental disorder
DD
ASD, ADHD, ID, epilepsy/seizures
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Rare de novo gain-of-function missense variants in DOT1L are associated with developmental delay and congenital anomalies
Nil-Deshwan neurodevelopmental syndrome, DD
ASD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1503R001 
 missense_variant 
 c.123C>G 
 p.Ile41Met 
 De novo 
  
  
 GEN1503R002 
 missense_variant 
 c.121A>T 
 p.Ile41Phe 
 De novo 
  
  
 GEN1503R003 
 missense_variant 
 c.255C>G 
 p.Ile85Met 
 Unknown 
 Not paternal 
  
 GEN1503R004 
 missense_variant 
 c.400G>A 
 p.Glu134Lys 
 Unknown 
 Not maternal 
  
 GEN1503R005 
 missense_variant 
 c.409G>A 
 p.Gly137Arg 
 De novo 
  
  
 GEN1503R006 
 missense_variant 
 c.469G>A 
 p.Asp157Asn 
 De novo 
  
  
 GEN1503R007 
 missense_variant 
 c.469G>T 
 p.Asp157Tyr 
 Unknown 
  
  
 GEN1503R008 
 missense_variant 
 c.565G>A 
 p.Asp189Asn 
 De novo 
  
  
 GEN1503R009 
 missense_variant 
 c.565G>A 
 p.Asp189Asn 
 Unknown 
  
  
 GEN1503R010 
 missense_variant 
 c.806C>T 
 p.Ser269Leu 
 De novo 
  
  
 GEN1503R011 
 missense_variant 
 c.995C>G 
 p.Pro332Arg 
 Unknown 
 Not maternal 
  
 GEN1503R012 
 missense_variant 
 c.1262A>G 
 p.Asn421Ser 
 De novo 
  
  
 GEN1503R013 
 inframe_deletion 
 c.1624_1626del 
 p.Glu542del 
 De novo 
  
  
 GEN1503R014 
 stop_gained 
 c.1792C>T 
 p.Gln598Ter 
 De novo 
  
  
 GEN1503R015 
 missense_variant 
 c.2075T>G 
 p.Leu692Arg 
 De novo 
  
  
 GEN1503R016 
 frameshift_variant 
 c.3199_3200del 
 p.Leu1067AspfsTer66 
 Familial 
 Maternal 
  
 GEN1503R017 
 missense_variant 
 c.133T>G 
 p.Cys45Gly 
 De novo 
  
  
 GEN1503R018 
 missense_variant 
 c.299C>T 
 p.Thr100Met 
 De novo 
  
  
 GEN1503R019 
 missense_variant 
 c.367G>A 
 p.Glu123Lys 
 Unknown 
  
  
 GEN1503R020 
 missense_variant 
 c.367G>A 
 p.Glu123Lys 
 De novo 
  
  
 GEN1503R021 
 missense_variant 
 c.367G>A 
 p.Glu123Lys 
 De novo 
  
  
 GEN1503R022 
 missense_variant 
 c.385G>A 
 p.Glu129Lys 
 De novo 
  
  
 GEN1503R023 
 missense_variant 
 c.1876C>G 
 p.Leu626Val 
 De novo 
  
  
 GEN1503R024 
 missense_variant 
 c.2557C>T 
 p.Arg853Cys 
 De novo 
  
  
 GEN1503R025 
 missense_variant 
 c.3074A>T 
 p.Lys1025Met 
 De novo 
  
  
 GEN1503R026 
 stop_gained 
 c.1822C>T 
 p.Gln608Ter 
 De novo 
  
 Simplex 
 GEN1503R027 
 synonymous_variant 
 c.1344A>C 
 p.Ser448= 
 De novo 
  
  
 GEN1503R028 
 stop_gained 
 c.1348C>T 
 p.Gln450Ter 
 De novo 
  
 Simplex 
 GEN1503R029 
 missense_variant 
 c.2822G>C 
 p.Gly941Ala 
 De novo 
  
 Unknown 
 GEN1503R030 
 missense_variant 
 c.4432C>T 
 p.Pro1478Ser 
 De novo 
  
 Simplex 
 GEN1503R031 
 synonymous_variant 
 c.2610G>A 
 p.Pro870= 
 De novo 
  
 Simplex 
 GEN1503R032 
 missense_variant 
 c.1399G>A 
 p.Val467Met 
 De novo 
  
  
 GEN1503R033 
 missense_variant 
 c.499G>C 
 p.Gly167Arg 
 Unknown 
  
  
 GEN1503R034 
 missense_variant 
 c.1238G>A 
 p.Arg413His 
 Unknown 
  
 Multiplex 
 GEN1503R035 
 missense_variant 
 c.766C>T 
 p.Arg256Trp 
 De novo 
  
  
 GEN1503R036 
 missense_variant 
 c.874C>T 
 p.Arg292Cys 
 De novo 
  
  
 GEN1503R037 
 stop_gained 
 c.1957C>T 
 p.Gln653Ter 
 De novo 
  
  
 GEN1503R038 
 missense_variant 
 c.3437C>G 
 p.Pro1146Arg 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
19
Deletion-Duplication
 37
 
19
Deletion-Duplication
 10
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.