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Relevance to Autism

Ariyama et al., 2026 identified 11 patients from 8 families with either de novo heterozygous or homozygous variants in DOP1A presenting with neurodevelopmental phenotypes, including developmental delay in all individuals and intellectual disability in 8 individuals, as well as autistic features in 4 individuals and sterotypic behavior in two others; in the same report, the authors observed behavioral abnormalities, including impaired discrimination of novel and familiar mice in the 3-chamber social interaction assay, in both Dop1a knockout mice and mice harboring a patient-derived p.Arg355Cys variant. De novo variants in DOP1A, including a de novo loss-of-function variant and four de novo missense variants, have been identified in ASD probands from the SPARK cohort, the Autism Sequencing Consortium, and a Chinese ASD cohort (Zhou et al., 2022; Fu et al., 2022; Trost et al., 2022; Wang et al., 2023; Tan et al., 2025).

Molecular Function

Predicted to be involved in Golgi to endosome transport and endoplasmic reticulum organization. Predicted to be located in Golgi membrane. Predicted to be active in endosome and trans-Golgi network. Ariyama et al., 2026 recently demonstrated that Dop1a regulates nuclear phospholipid homeostatis under the control of mTOR signaling, and that loss of Dop1a resulted in neural cell overgrowth and compromised neural development in mice.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The mTOR-Dop1a-Agpat2 axis regulates nuclear phospholipid homeostasis.
DD, ID
Autistic features, stereotypy
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
Whole-genome sequencing in an autism multiplex family.
ASD
Support
Monoallelic loss-of-function variants in GSK3B lead to autism and developmental delay
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1548R001 
 missense_variant 
 c.1063C>T 
 p.Arg355Cys 
 De novo 
  
 Simplex 
 GEN1548R002 
 frameshift_variant 
 c.5368_5369del 
 p.Ile1790CysfsTer10 
 De novo 
  
 Multiplex 
 GEN1548R003 
 stop_gained 
 c.6119T>G 
 p.Leu2040Ter 
 De novo 
  
 Simplex 
 GEN1548R004a 
 stop_gained 
 c.5977C>T 
 p.Arg1993Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN1548R005a 
 missense_variant 
 c.2894G>T 
 p.Ser965Ile 
 Familial 
 Both parents 
 Multiplex 
 GEN1548R006 
 frameshift_variant 
 c.4093_4096del 
 p.Leu1365IlefsTer27 
 De novo 
  
 Simplex 
 GEN1548R007 
 frameshift_variant 
 c.1234_1238del 
 p.Asn412GlufsTer7 
 De novo 
  
 Simplex 
 GEN1548R008 
 synonymous_variant 
 c.411T>G 
 p.Gly137= 
 De novo 
  
 Simplex 
 GEN1548R009 
 missense_variant 
 c.7129G>A 
 p.Gly2377Ser 
 De novo 
  
 Simplex 
 GEN1548R010 
 missense_variant 
 c.173C>A 
 p.Pro58His 
 De novo 
  
  
 GEN1548R011 
 missense_variant 
 c.3682G>A 
 p.Val1228Met 
 De novo 
  
 Simplex 
 GEN1548R012 
 missense_variant 
 c.1399T>A 
 p.Leu467Ile 
 De novo 
  
 Simplex 
 GEN1548R013 
 splice_site_variant 
 G>C 
  
 De novo 
  
 Simplex 
 GEN1548R014 
 missense_variant 
 c.7241G>A 
 p.Arg2414Gln 
 Familial 
  
 Multiplex 
 GEN1548R015 
 stop_gained 
 c.6940C>T 
 p.Arg2314Ter 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 2
 
6
Deletion
 3
 
6
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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