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Relevance to Autism

This gene was originally identified as an ASD candidate gene based on its enrichment in an autism-associated protein interaction module; sequencing of post-mortem brain tissue from 25 ASD cases resulted in the identification of significant non-synonymous variants in this gene with an expected false-positive rate at 0.1, confirming the involvement of this module with autism (Li et al., 2014).

Molecular Function

The protein encoded by this gene is expressed in the brain, localizes to the postsynaptic density, and interacts with a number of ASD-associated proteins, including DLG1, DLG4, SHANK1, SHANK2 and SHANK3.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Support
Resequencing and Association Analysis of Six PSD-95-Related Genes as Possible Susceptibility Genes for Schizophrenia and Autism Spectrum Disorders.
ASD, SCZ
Support
De Novo Damaging DNA Coding Mutations Are Associated With Obsessive-Compulsive Disorder and Overlap With Tourette's Disorder and Autism.
OCD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
ASD
DD, ID
Support
Dlgap1 knockout mice exhibit alterations of the postsynaptic density and selective reductions in sociability.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN677R001 
 missense_variant 
 c.230C>T 
 p.Ser77Leu 
 Unknown 
  
 Unknown 
 GEN677R002 
 synonymous_variant 
 c.1002G>A 
 p.Thr334= 
 De novo 
  
 Unknown 
 GEN677R003 
 missense_variant 
 c.122G>A 
 p.Arg41Gln 
 De novo 
  
 Unknown 
 GEN677R004 
 missense_variant 
 c.2260G>A 
 p.Asp754Asn 
 Unknown 
  
  
 GEN677R005 
 missense_variant 
 c.1273G>A 
 p.Asp703Asn 
 Unknown 
  
  
 GEN677R006 
 missense_variant 
 c.1175T>C 
 p.Ile392Thr 
 Unknown 
  
  
 GEN677R007 
 missense_variant 
 c.497G>A 
 p.Gly166Asp 
 Unknown 
  
  
 GEN677R008 
 missense_variant 
 c.215G>A 
 p.Arg72His 
 Unknown 
  
  
 GEN677R009 
 missense_variant 
 c.22C>A 
 p.Arg8Ser 
 Unknown 
  
  
 GEN677R010 
 missense_variant 
 c.424G>T 
 p.Val142Leu 
 Unknown 
 Not maternal 
  
 GEN677R011 
 missense_variant 
 c.215G>A 
 p.Arg72His 
 De novo 
  
  
 GEN677R012 
 missense_variant 
 c.293G>A 
 p.Arg98His 
 Familial 
 Maternal 
 Simplex 
 GEN677R013 
 synonymous_variant 
 c.612G>A 
 p.Ser204= 
 De novo 
  
  
 GEN677R014 
 missense_variant 
 c.575A>G 
 p.Lys192Arg 
 De novo 
  
 Simplex 
 GEN677R015 
 splice_site_variant 
 c.1818+2T>C 
  
 De novo 
  
 Simplex 
 GEN677R016a 
 missense_variant 
 c.215G>A 
 p.Arg72His 
 Familial 
 Both parents 
 Multiplex 
 GEN677R017 
 missense_variant 
 c.2276C>A 
 p.Thr759Lys 
 De novo 
  
  
 GEN677R018 
 missense_variant 
 c.1082C>T 
 p.Thr361Met 
 Familial 
 Paternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
18
Deletion-Duplication
 14
 
18
Duplication
 2
 
18
Duplication
 11
 
18
Duplication
 11
 
18
Deletion
 2
 
18
Deletion
 3
 
18
Deletion-Duplication
 11
 
18
Duplication
 2
 
18
Duplication
 2
 

Model Summary

Dlgap1 KO mice showed disrupted protein interactions in the postsynaptic density, and deficits in sociability. Ambulation, rearing, anxiety, depression, locomotion, startle response and nest building were largely unaffected. Induced grooming and exploration activity were decreased (Coba MP, et al, Sci. Rep., 2018).

References

Type
Title
Author, Year
Primary
Dlgap1 knockout mice exhibit alterations of the postsynaptic density and selective reductions in sociability.
additional
Learning and reaction times in mouse touchscreen tests are differentially impacted by mutations in genes encoding postsynaptic interacting proteins SYNGAP1, NLGN3, DLGAP1, DLGAP2 and SHANK2

M_DLGAP1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice harboring a homozygous null mutation of the DLGAP1 allele. (No other information reported). .
Allele Type: Knockout
Strain of Origin: Not reported
Genetic Background: 129*C57BL/6 J
ES Cell Line: Not reported
Mutant ES Cell Line: Not reported
Model Source: Dr. Seth Grant at Edinburgh University.

M_DLGAP1_2_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mice harboring a heterozygous null mutation of the DLGAP1 allele. (No other information reported). .
Allele Type: Knockout
Strain of Origin: Not reported
Genetic Background: 129*C57BL/6 J
ES Cell Line: Not reported
Mutant ES Cell Line: Not reported
Model Source: Dr. Seth Grant at Edinburgh University.

M_DLGAP1_3_KO_HM

Model Type: Genetic LOF
Model Genotype: Homozygous
Mutation: Mutant mice have dlgap1 exon 4 replaced with a selection cassette that creates a frameshift between exons 4 and 5. 795bp of dlgap1 genomic dna (x70662625 to x70663420; ensemble build 68) is replaced with ires-lacz-neo cassette.
Allele Type: Knockout
Strain of Origin: C57BL/6*129S5
Genetic Background: C57BL/6*129S5
ES Cell Line: E14TG2a
Mutant ES Cell Line: E14TG2a
Model Source: University of Edinburgh

M_DLGAP1_4_KO_HT

Model Type: Genetic LOF
Model Genotype: Heterozygous
Mutation: Mutant mice have dlgap1 exon 4 replaced with a selection cassette that creates a frameshift between exons 4 and 5. 795bp of dlgap1 genomic dna (x70662625 to x70663420; ensemble build 68) is replaced with ires-lacz-neo cassette.
Allele Type: Knockout
Strain of Origin: C57BL/6*129S5
Genetic Background: C57BL/6*129S5
ES Cell Line: E14TG2a
Mutant ES Cell Line: E14TG2a
Model Source: University of Edinburgh

M_DLGAP1_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Self grooming: artificial stress evoked1
Decreased
Description: Dlgap1 ko mice showed a longer latency to groom compared to either wt or ht mice. male dlgap1 ko mutants had fewer grooming bouts than hts. male hts had longer grooming bouts than female hts.
Exp Paradigm: NA
 Splash test to evoke grooming behavior
 2-2.75 months
Social approach1
Decreased
Description: Male mutants spent less time in the chamber with the unfamiliar mouse compared to controls. male mutants spent less time rearing around the unfamiliar stimulus mouse compared to controls. dlgap1 ko females sniffed the stimulus mouse less than dlgap1 ko males.
Exp Paradigm: NA
 Three-chamber social approach test
 2-2.75 months
Exploratory activity1
Decreased
Description: Male mutants show an increased latency to dig compared to male wt mice. mutant male dlgap1 ko mice had longer latencies to dig than female ko mice. both male and female dlgap1 ko mice exhibiting fewer digging bouts than wt mice. mutants show no change in total time spent digging or average bout duration compared to controls.
Exp Paradigm: Latency to dig, total time digging, number of bouts digging, and average bout duration were measured.
 Novel cage test
 2-2.75 months
Targeted expression1
Decreased
Description: Mutants show no dlgap1 in dlgap1 immuprecipitates compared to controls, indicating an absence of dlgap1 in mutants.
Exp Paradigm: NA
 Co-immunoprecipitation
 2-2.75 months
Protein binding1
Decreased
Description: Mutants show reduced binding of shank3 with dlg4 compared to controls.
Exp Paradigm: NA
 Co-immunoprecipitation
 2-2.75 months
Anxiety1
 No change
 Open field test
 2-2.75 months
Depression1
 No change
 Sucrose preference test
 2-2.75 months
Depression1
 No change
 Forced swim test
 2-2.75 months
Protein binding1
 No change
 Co-immunoprecipitation
 2-2.75 months
Protein expression level evidence1
 No change
 Western blot
 2-2.75 months
General locomotor activity1
 No change
 Open field test
 2-2.75 months
General locomotor activity: ambulatory activity1
 No change
 Open field test
 2-2.75 months
Startle response1
 No change
 Prepulse inhibition
 2-2.75 months
Nest building behavior1
 No change
 Nest building assay
 2-2.75 months
Rearing behavior1
 No change
 Open field test
 2-2.75 months
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory

M_DLGAP1_2_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Social approach1
Decreased
Description: Male mutants spent less time in the chamber with the unfamiliar mouse compared to controls. male mutants spent less time rearing around the unfamiliar stimulus mouse compared to controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-2.75 months
Anxiety1
 No change
 Open field test
 2-2.75 months
Depression1
 No change
 Sucrose preference test
 2-2.75 months
Depression1
 No change
 Forced swim test
 2-2.75 months
Exploratory activity1
 No change
 Novel cage test
 2-2.75 months
General locomotor activity1
 No change
 Open field test
 2-2.75 months
General locomotor activity: ambulatory activity1
 No change
 Open field test
 2-2.75 months
Self grooming: artificial stress evoked1
 No change
 Splash test to evoke grooming behavior
 2-2.75 months
Startle response1
 No change
 Prepulse inhibition
 2-2.75 months
Nest building behavior1
 No change
 Nest building assay
 2-2.75 months
Rearing behavior1
 No change
 Open field test
 2-2.75 months
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory

M_DLGAP1_3_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Reaction time: cognitive flexibility1
Decreased
Description: Decrease in response latency for reward collection but no change in response latency for correct reponse or incorrect response
 Pairwise visual discrimination task
 10â??18weeks
Reaction time: visual discrimination1
Decreased
Description: Decrease in response latency for reward collection but no change in response latency for correct reponse or incorrect response
 Pairwise visual discrimination task
 10â??18weeks
Cognitive flexibility1
 No change
 Pairwise visual discrimination task
 10â??18weeks
Reward reinforced choice behavior1
 No change
 Operant conditioning paradigm
 10â??18weeks
Visual discrimination learning1
 No change
 Pairwise visual discrimination task
 10â??18weeks
Hyperactivity1
 No change
 Home cage behavior
 10â??18weeks
 Not Reported:

M_DLGAP1_4_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Cognitive flexibility1
 No change
 Pairwise visual discrimination task
 10â??18weeks
Reaction time: visual discrimination1
 No change
 Pairwise visual discrimination task
 10â??18weeks
Reward reinforced choice behavior1
 No change
 Operant conditioning paradigm
 10â??18weeks
Visual discrimination learning1
 No change
 Pairwise visual discrimination task
 10â??18weeks
Hyperactivity1
 No change
 Home cage behavior
 10â??18weeks
Reaction time: cognitive flexibility1
 No change
 Pairwise visual discrimination task
 10â??18weeks
 Not Reported:

 

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