Summary Statistics:
ASD Reports: 23
Recent Reports: 2
Annotated variants: 106
Associated CNVs: 6
Evidence score: 3
Gene Score: S
Relevance to Autism
Mutations in the DEPDC5 gene have been implicated in familial focal epilepsy with variable foci (FFEVF) and autosomal dominant focal epilepsies (Dibbens et al., 2013; Ishida et al., 2013; Scheffer et al., 2014). In one FFEVF family (A1) reported in Dibbens et al., 2013, three affected family members also had ASD, including one individual with ASD who had not had seizures. Scheffer et al., 2014 identified a maternally-inherited nonsense variant in the DEPDC5 gene in a family with 6 affected males presenting with focal epilepsy (family A); one of the affected males in this family also presented with severe intellectual disability and ASD.
Molecular Function
Unknown function; shared homology with G protein signaling molecules and neuronal localization suggest a role in neuronal signal transduction.
References
Primary
Mutations in DEPDC5 cause familial focal epilepsy with variable foci.
Epilepsy
ASD, ID, SCZ, OCD
Support
Autistic Siblings with Novel Mutations in Two Different Genes: Insight for Genetic Workups of Autistic Siblings and Connection to Mitochondrial Dys...
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Epilepsy/seizures
Support
Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Epilepsy/seizures
Support
Diagnostic Yields of Trio-WES Accompanied by CNVseq for Rare Neurodevelopmental Disorders.
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutations in mammalian target of rapamycin regulator DEPDC5 cause focal epilepsy with brain malformations.
Epilepsy/seizures
ASD, ID
Support
The Clinical and Genetic Features of Co-occurring Epilepsy and Autism Spectrum Disorder in Chinese Children.
ASD, epilepsy/seizures
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
Support
Mutations of DEPDC5 cause autosomal dominant focal epilepsies.
Epilepsy
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
Epilepsy/seizures
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Epilepsy/seizures
ADHD
Support
Non-canonical mTOR-Independent Role of DEPDC5 in Regulating GABAergic Network Development.
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
DD, epilepsy/seizures
Support
Depdc5 knockdown causes mTOR-dependent motor hyperactivity in zebrafish.
Support
Genome sequencing of 320 Chinese children with epilepsy: a clinical and molecular study
DD, epilepsy/seizures
Recent Recommendation
The landscape of epilepsy-related GATOR1 variants.
Familial focal epilepsy with variable foci-1 (FFEV
ASD or autistic features
Recent Recommendation
DEPDC5 and NPRL3 modulate cell size, filopodial outgrowth, and localization of mTOR in neural progenitor cells and neurons.
GEN541R001
stop_gained
c.21C>G
p.Tyr7Ter
Familial
Maternal and paternal
Multi-generational
GEN541R002
stop_gained
c.1663C>T
p.Arg555Ter
Familial
Unknown
Multi-generational
GEN541R003
inframe_deletion
c.484-485del
Familial
Maternal and paternal
Multi-generational
GEN541R004
stop_gained
c.4107G>A
p.Trp1369Ter
Familial
Maternal and paternal
Multi-generational
GEN541R005
stop_gained
c.4606C>T
p.Gln1536Ter
Familial
Maternal and paternal
Multi-generational
GEN541R006
stop_gained
c.4397G>A
p.Trp1466Ter
Familial
Maternal and paternal
Multi-generational
GEN541R007
stop_gained
c.4397G>A
p.Trp1466Ter
Familial
Maternal
Multiplex
GEN541R008
splice_site_variant
c.193+1G>A
Familial
Maternal and paternal
Multi-generational
GEN541R009
splice_site_variant
c.279+1G>A
Unknown
Not paternal
Multi-generational
GEN541R010
stop_gained
c.1459C>T
p.Arg487Ter
Familial
Paternal
Multiplex
GEN541R011
stop_gained
c.2500C>T
p.Arg834Ter
Familial
Paternal
Multi-generational
GEN541R012
stop_gained
c.3802C>T
p.Arg1268Ter
Unknown
Multiplex
GEN541R013
missense_variant
c.3311C>T
p.Ser1104Leu
Familial
Paternal
Multi-generational
GEN541R014
missense_variant
c.3217A>C
p.Ser1073Arg
Unknown
Not parental
Multiplex
GEN541R015
missense_variant
c.1355C>T
p.Ala452Val
Familial
Maternal
Multi-generational
GEN541R016
frameshift_variant
c.1122del
p.Leu374PhefsTer30
Familial
Maternal and paternal
Multi-generational
GEN541R017
stop_gained
c.715C>T
p.Arg239Ter
Familial
Maternal and paternal
Multi-generational
GEN541R018
stop_gained
c.982C>T
p.Arg328Ter
Familial
Maternal
Multi-generational
GEN541R019
stop_gained
c.1114C>T
p.Gln372Ter
Familial
Maternal
Multi-generational
GEN541R020
missense_variant
c.1454G>A
p.Arg485Gln
Familial
Maternal
Multiplex
GEN541R021
stop_gained
c.4567C>T
p.Gln1523Ter
Unknown
Multiplex
GEN541R022
frameshift_variant
c.3114_3118del
p.Met1038IlefsTer112
Familial
Maternal
GEN541R023
missense_variant
ENST00000400246:c.4636T>C
p.Tyr1546His
Familial
Paternal
Multiplex
GEN541R024
stop_gained
c.418C>T
p.Gln140Ter
Familial
Maternal
Extended multiplex
GEN541R025
frameshift_variant
c.232del
p.Arg78GlyfsTer2
Familial
Maternal
Multi-generational
GEN541R026
frameshift_variant
c.232del
p.Arg78GlyfsTer2
Unknown
Multi-generational
GEN541R027
splice_site_variant
c.279+1G>A
Familial
Maternal
Multi-generational
GEN541R028
frameshift_variant
c.299del
p.Val100GlyfsTer3
Unknown
Simplex
GEN541R029
stop_gained
c.319C>T
p.Gln107Ter
Familial
Paternal
Unknown
GEN541R030
frameshift_variant
c.378del
p.Tyr127IlefsTer51
Familial
Maternal
Multi-generational
GEN541R031
frameshift_variant
c.422_423insCTGG
p.Gly142TrpfsTer3
Familial
Paternal
Simplex
GEN541R032
stop_gained
c.435G>A
p.Trp145Ter
Unknown
Not simplex
GEN541R033
missense_variant
c.542T>A
p.Met181Lys
Familial
Paternal
Simplex
GEN541R034
stop_gained
c.715C>T
p.Arg239Ter
Familial
Paternal
Simplex
GEN541R035
stop_gained
c.727C>T
p.Arg243Ter
Unknown
Simplex
GEN541R036
stop_gained
c.727C>T
p.Arg243Ter
Unknown
Multi-generational
GEN541R037
frameshift_variant
c.790del
p.Arg264GlufsTer9
Unknown
Not simplex
GEN541R038
stop_gained
c.856C>T
p.Arg286Ter
Familial
Maternal
Simplex
GEN541R039
frameshift_variant
c.943_944insG
p.Asn315ArgfsTer4
Familial
Paternal
Multi-generational
GEN541R040
stop_gained
c.982C>T
p.Arg328Ter
De novo
Multi-generational
GEN541R041
stop_gained
c.1114C>T
p.Gln372Ter
Unknown
Not simplex
GEN541R042
frameshift_variant
c.1165dup
p.Arg389ProfsTer2
Unknown
Simplex
GEN541R043
stop_gained
c.1264C>T
p.Arg422Ter
Familial
Paternal
Extended multiplex
GEN541R044
frameshift_variant
c.1310del
p.Asn437MetfsTer21
Familial
Maternal
Multi-generational
GEN541R045
frameshift_variant
c.1310del
p.Asn437MetfsTer21
Familial
Maternal
Not simplex
GEN541R046
missense_variant
c.1385A>G
p.Tyr462Cys
Unknown
Simplex
GEN541R047
frameshift_variant
c.1400_1401insGG
p.Phe467LeufsTer51
Familial
Paternal
Simplex
GEN541R048
stop_gained
c.1474C>T
p.Arg492Ter
Unknown
Simplex
GEN541R049
stop_gained
c.1474C>T
p.Arg492Ter
Unknown
Simplex
GEN541R050
stop_gained
c.1663C>T
p.Arg555Ter
Familial
Maternal
Multi-generational
GEN541R051
stop_gained
c.1663C>T
p.Arg555Ter
Familial
Paternal
Multi-generational
GEN541R052
frameshift_variant
Familial
Maternal
Not simplex
GEN541R053
stop_gained
c.2485C>T
p.Arg829Ter
Unknown
Multiplex
GEN541R054
stop_gained
c.2512C>T
p.Arg838Ter
Unknown
Unknown
GEN541R055
stop_gained
c.2512C>T
p.Arg838Ter
Familial
Maternal
Extended multiplex
GEN541R056
stop_gained
c.2527C>T
p.Arg843Ter
Unknown
Multi-generational
GEN541R057
stop_gained
c.2527C>T
p.Arg843Ter
Familial
Paternal
Multi-generational
GEN541R058
stop_gained
c.2593C>T
p.Arg865Ter
Familial
Paternal
Multi-generational
GEN541R059
stop_gained
c.2620C>T
p.Arg874Ter
Familial
Maternal
Simplex
GEN541R060
stop_gained
c.2620C>T
p.Arg874Ter
Unknown
Unknown
GEN541R061
missense_variant
c.2715G>T
p.Trp905Cys
Familial
Paternal
Unknown
GEN541R062
stop_gained
c.2760C>A
p.Tyr920Ter
Familial
Maternal
Simplex
GEN541R063
missense_variant
c.2783C>T
p.Ala928Val
Familial
Paternal
Not simplex
GEN541R064
frameshift_variant
c.2824_2839del
p.Ala942ProfsTer38
Familial
Paternal
Simplex
GEN541R065
missense_variant
c.2989C>T
p.Arg997Cys
Familial
Paternal
Simplex
GEN541R066
splice_site_variant
c.2994+1G>A
Familial
Paternal
Simplex
GEN541R067
missense_variant
c.3113C>A
p.Thr1038Asn
De novo
Simplex
GEN541R068
frameshift_variant
c.3203_3207del
p.Ala1068AspfsTer82
Familial
Maternal
Not simplex
GEN541R069
stop_gained
c.3259C>T
p.Arg1087Ter
Familial
Paternal
Multi-generational
GEN541R070
splice_region_variant
c.3303+5G>C
Familial
Paternal
Not simplex
GEN541R071
missense_variant
c.3507C>G
p.Ser1169Arg
Familial
Maternal
Multi-generational
GEN541R072
splice_region_variant
c.3536+4A>G
Unknown
Simplex
GEN541R073
inframe_indel
c.3631_3642delinsATACACCTCCAT
p.Val1211_Leu1214delinsIleHisLeuHis
Familial
Maternal
Simplex
GEN541R074
splice_region_variant
c.3669+5G>A
Unknown
Multi-generational
GEN541R075
stop_gained
c.3802C>T
p.Arg1268Ter
Unknown
Simplex
GEN541R076
stop_gained
c.3994C>T
p.Arg1332Ter
Familial
Maternal
Simplex
GEN541R077
stop_gained
c.4031T>A
p.Leu1344Ter
Familial
Paternal
Simplex
GEN541R078
frameshift_variant
c.4151_4152insC
p.Glu1385Ter
Familial
Maternal
Multi-generational
GEN541R079
missense_variant
c.4175C>T
p.Ala1392Val
Familial
Paternal
Simplex
GEN541R080
frameshift_variant
c.4393del
p.Glu1465LysfsTer100
Familial
Paternal
Not simplex
GEN541R081
splice_site_variant
c.4520-2A>G
Unknown
Simplex
GEN541R082
stop_gained
c.4674G>A
p.Trp1558Ter
Unknown
Unknown
GEN541R083
copy_number_loss
Familial
Paternal
Multi-generational
GEN541R084
copy_number_loss
Unknown
Multiplex
GEN541R085
copy_number_loss
Familial
Paternal
Not simplex
GEN541R086
copy_number_loss
Unknown
Simplex
GEN541R087
copy_number_loss
Unknown
Multi-generational
GEN541R088
missense_variant
c.3859G>A
p.Val1287Met
Familial
Paternal
GEN541R089
stop_gained
c.1474C>T
p.Arg492Ter
Familial
Maternal
Multi-generational
GEN541R090
missense_variant
c.3311C>T
p.Ser1104Leu
Familial
Paternal
GEN541R091
frameshift_variant
c.1936dup
p.Ser646LysfsTer20
De novo
GEN541R092
synonymous_variant
c.2170+11G>A
De novo
GEN541R093
missense_variant
c.2000A>G
p.Lys667Arg
Familial
Paternal
GEN541R094
stop_gained
c.1453C>T
p.Arg485Ter
De novo
GEN541R095
synonymous_variant
c.4584G>A
p.Arg1528%3D
Unknown
GEN541R096
missense_variant
c.20A>G
p.Tyr7Cys
Unknown
GEN541R097
splice_site_variant
c.694+1G>A
Unknown
GEN541R098
missense_variant
c.1832C>T
p.Thr611Met
De novo
GEN541R099
synonymous_variant
c.4155C>T
p.Thr1385%3D
De novo
GEN541R100
missense_variant
c.4781C>T
p.Pro1594Leu
De novo
GEN541R101
missense_variant
c.1460G>A
p.Arg487Gln
Familial
Maternal
Simplex
GEN541R102
missense_variant
c.531G>A
p.Met177Ile
Unknown
Simplex
GEN541R103
missense_variant
c.3688C>T
p.Leu1230Phe
Unknown
Simplex
GEN541R104
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
Simplex
GEN541R105
stop_gained
c.3259C>T
p.Arg1087Ter
Familial
Maternal
Multiplex
GEN541R106
copy_number_loss
Unknown
Simplex
No Common Variants Available
22
Deletion-Duplication
7
22
Deletion-Duplication
23
No Animal Model Data Available
No PIN Data Available