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Relevance to Autism

De novo missense variants in the DENR gene were identified in two unrelated ASD probands (Neale et al., 2012; Haas et al., 2016); additional functional characterization of these variants in Haas et al., 2016 demonstrated effects on migration, dendritic branching, and dendritic spine properties of cortical neurons.

Molecular Function

This gene encodes a protein that is involved in mRNA translation initiation by promoting the recruitment of aminoacetyled initiator tRNA to P site of 40S ribosomes. Haas et al., 2016 demonstrated that DENR controls radial migration in the mouse brain through its binding partner MCTS1.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD
Support
40S ribosome profiling reveals distinct roles for Tma20/Tma22 (MCT-1/DENR) and Tma64 (eIF2D) in 40S subunit recycling
ASD
Support
Contribution of rare and common variants to intellectual disability in a sub-isolate of Northern Finland.
ID
ASD
Recent Recommendation
De Novo Mutations in DENR Disrupt Neuronal Development and Link Congenital Neurological Disorders to Faulty mRNA Translation Re-initiation.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN825R001 
 missense_variant 
 c.110G>A 
 p.Cys37Tyr 
 De novo 
  
 Simplex 
 GEN825R002 
 missense_variant 
 c.362C>T 
 p.Pro121Leu 
 De novo 
  
 Simplex 
 GEN825R003 
 missense_variant 
 c.67T>G 
 p.Leu23Val 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Duplication
 3
 
12
Duplication
 1
 
12
Deletion-Duplication
 26
 
12
Deletion-Duplication
 2
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
AMZ2 archaelysin family metallopeptidase 2 51321 Q86W34 IP; LC-MS/MS
Huttlin EL , et al. 2015
ATG13 ATG13 autophagy related 13 homolog (S. cerevisiae) 9776 O75143 IP; LC-MS/MS
Huttlin EL , et al. 2015
BTBD1 BTB (POZ) domain containing 1 53339 Q9H0C5 IP; LC-MS/MS
Huttlin EL , et al. 2015
CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 8851 Q15078 IP; LC-MS/MS
Huttlin EL , et al. 2015
CHGA Chromogranin-A P10645 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) 9318 P61201 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) 51138 B3KST5 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) 10987 Q92905 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS6 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) 10980 Q7L5N1 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS7A COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) 50813 Q9UBW8 IP; LC-MS/MS
Huttlin EL , et al. 2015
COPS7B COP9 signalosome subunit 7B 64708 Q9H9Q2 IP; LC-MS/MS
Huttlin EL , et al. 2015
DHTKD1 dehydrogenase E1 and transketolase domain containing 1 55526 Q96HY7 IP; LC-MS/MS
Huttlin EL , et al. 2015
DOCK11 dedicator of cytokinesis 11 139818 Q5JSL3 IP; LC-MS/MS
Huttlin EL , et al. 2015
FGB fibrinogen beta chain 2244 P02675 IP; LC-MS/MS
Huttlin EL , et al. 2015
FSD1 fibronectin type III and SPRY domain containing 1 79187 Q9BTV5 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAPT microtubule-associated protein tau 4137 P10636 IP; LC-MS/MS
Huttlin EL , et al. 2015
MCTS1 Malignant T-cell-amplified sequence 1 Q9ULC4-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
METTL11A N-terminal Xaa-Pro-Lys N-methyltransferase 1 28989 Q9BV86 IP; LC-MS/MS
Huttlin EL , et al. 2015
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha NM_020529 P25963 IP; LC-MS/MS
Huttlin EL , et al. 2015
NSUN4 NOP2/Sun domain family, member 4 387338 A8K8I8 IP; LC-MS/MS
Huttlin EL , et al. 2015
NUDT6 Nucleoside diphosphate-linked moiety X motif 6 P53370 IP; LC-MS/MS
Huttlin EL , et al. 2015
OXNAD1 oxidoreductase NAD-binding domain containing 1 92106 Q96HP4 IP; LC-MS/MS
Huttlin EL , et al. 2015
PDK1 pyruvate dehydrogenase kinase, isozyme 1 NM_002610 Q15118 IP; LC-MS/MS
Huttlin EL , et al. 2015
PDLIM5 PDZ and LIM domain 5 10611 Q96HC4 IP; LC-MS/MS
Huttlin EL , et al. 2015
RB1CC1 RB1-inducible coiled-coil 1 9821 Q8TDY2 IP; LC-MS/MS
Huttlin EL , et al. 2015
RWDD2B RWD domain containing 2B 10069 P57060 IP; LC-MS/MS
Huttlin EL , et al. 2015
SLC25A32 solute carrier family 25 (mitochondrial folate carrier) , member 32 81034 Q9H2D1 IP; LC-MS/MS
Huttlin EL , et al. 2015
SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) 11017 A8K513 IP; LC-MS/MS
Huttlin EL , et al. 2015
TALDO1 transaldolase 1 6888 P37837 IP; LC-MS/MS
Huttlin EL , et al. 2015
USP47 ubiquitin specific peptidase 47 55031 Q96K76 IP; LC-MS/MS
Huttlin EL , et al. 2015
VDAC2 voltage-dependent anion channel 2 7417 P45880 IP; LC-MS/MS
Huttlin EL , et al. 2015
Mcts1 malignant T cell amplified sequence 1 68995 Q9DB27 IP/WB; Co-localization
Haas MA , et al. 2016

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