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Relevance to Autism

Rare deletions involving the DDX53 gene have been identified in individuals with ASD (Pinto et al., 2010; Prasad et al., 2012; Nava et al., 2014). More recently, Scala et al., 2024 identified 10 individuals with ASD from 8 unrelated families, including three individuals from two families from the SPARK cohort, carrying rare, predicted damaging or loss-of-function variants in DDX53; they subsequently reported an additional 23 individuals with ASD from the SPARK and MSSNG cohorts carrying mostly maternally-inherited, rare, damaging DDX53 variants.

Molecular Function

This intronless gene encodes a protein which contains several domains found in members of the DEAD-box helicase protein family. Other members of this protein family participate in ATP-dependent RNA unwinding.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Functional impact of global rare copy number variation in autism spectrum disorders.
ASD
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Unveiling genetic insights: Array-CGH and WES discoveries in a cohort of 122 children with essential autism spectrum disorder
ASD
Support
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
ASD
ID
Recent Recommendation
Genetic variants in DDX53 contribute to autism spectrum disorder associated with the Xp22.11 locus
ASD
ADHD, DD, ID, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN332R001 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN332R002 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN332R003 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN332R004 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN332R005 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN332R006 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN332R007 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN332R008 
 synonymous_variant 
 c.864A>C 
 p.Pro288= 
 De novo 
  
  
 GEN332R009 
 frameshift_variant 
 c.530_549del 
 p.Asn177SerfsTer7 
 Familial 
 Maternal 
  
 GEN332R010 
 missense_variant 
 c.871A>G 
 p.Arg291Gly 
 Familial 
 Maternal 
 Simplex 
 GEN332R011 
 missense_variant 
 c.834G>A 
 p.Met278Ile 
 Familial 
 Maternal 
 Simplex 
 GEN332R012 
 frameshift_variant 
 c.567_568insTGCAGGT 
 p.Glu190CysfsTer3 
 Familial 
 Maternal 
 Multiplex 
 GEN332R013 
 missense_variant 
 c.977G>A 
 p.Ser326Asn 
 Familial 
 Maternal 
 Simplex 
 GEN332R014 
 missense_variant 
 c.1736C>T 
 p.Ala579Val 
 Familial 
 Maternal 
 Multiplex 
 GEN332R015 
 missense_variant 
 c.259G>T 
 p.Gly87Trp 
 Familial 
 Maternal 
 Simplex 
 GEN332R016 
 missense_variant 
 c.594G>T 
 p.Lys198Asn 
 Familial 
 Maternal 
 Simplex 
 GEN332R017 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN332R018 
 stop_gained 
 c.24G>A 
 p.Trp8Ter 
 Unknown 
  
 Simplex 
 GEN332R019 
 missense_variant 
 c.635A>G 
 p.Glu212Gly 
 Familial 
 Maternal 
 Simplex 
 GEN332R020 
 missense_variant 
 c.812G>A 
 p.Gly271Glu 
 Familial 
 Maternal 
 Simplex 
 GEN332R021 
 missense_variant 
 c.812G>A 
 p.Gly271Glu 
 Familial 
 Maternal 
 Simplex 
 GEN332R022 
 missense_variant 
 c.844A>T 
 p.Ile282Phe 
 Unknown 
  
 Simplex 
 GEN332R023 
 missense_variant 
 c.1043T>C 
 p.Ile348Thr 
 Familial 
 Maternal 
 Simplex 
 GEN332R024 
 missense_variant 
 c.1073A>G 
 p.Asp358Gly 
 Familial 
 Maternal 
 Simplex 
 GEN332R025 
 missense_variant 
 c.1112C>T 
 p.Thr371Ile 
 Unknown 
  
 Simplex 
 GEN332R026 
 missense_variant 
 c.1132G>A 
 p.Ala378Thr 
 Unknown 
  
 Simplex 
 GEN332R027 
 inframe_indel 
 c.1143_1144delGCinsTA 
 p.Met381_Leu382delinsIleMet 
 Familial 
 Maternal 
 Simplex 
 GEN332R028 
 missense_variant 
 c.1303C>A 
 p.Leu435Ile 
 Unknown 
  
 Simplex 
 GEN332R029 
 missense_variant 
 c.1342A>C 
 p.Thr448Pro 
 Familial 
 Maternal 
 Simplex 
 GEN332R030 
 missense_variant 
 c.1736C>T 
 p.Ala579Val 
 Unknown 
  
 Simplex 
 GEN332R031 
 inframe_deletion 
 c.1771_1773del 
 p.Gln591del 
 Unknown 
  
 Multiplex 
 GEN332R032 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN332R033 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Unknown 
 GEN332R034 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN332R035 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN332R036 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN332R037 
 missense_variant 
 c.1678C>T 
 p.Arg560Trp 
 Familial 
 Maternal 
  
 GEN332R038 
 missense_variant 
 c.543A>C 
 p.Glu181Asp 
 Familial 
 Maternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion-Duplication
 3
 
X
Deletion-Duplication
 19
 
X
Deletion
 1
 
X
Deletion
 3
 
X
Deletion
 4
 
X
Deletion-Duplication
 1
 
X
Deletion
 1
 
X
Duplication
 1
 
X
Duplication
 2
 
X
Deletion
 4
 
X
Deletion
 1
 
X
Deletion-Duplication
 22
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
DDX43 Probable ATP-dependent RNA helicase DDX43 55510 Q9NXZ2 IP; LC-MS/MS
Huttlin EL , et al. 2015
DNMT1 DNA (cytosine-5-)-methyltransferase 1 1786 P26358 ChIP
Kim Y , et al. 2010
HDAC2 histone deacetylase 2 3066 Q92769 IP/WB; in vitro deacetylation assay
Kim Y , et al. 2010
TP53 tumor protein p53 7157 P04637 ChIP
Kim Y , et al. 2010
UBC ubiquitin C 7316 P63279 IP/WB
Kim W , et al. 2011

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