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Relevance to Autism

A cross-trait meta-analysis of genome-wide association studies on schizophrenia (65,967 cases), bipolar disorder (41,653 cases), autism spectrum disorder (46,350 cases), ADHD (55,374 cases) and depression (688,809 cases) identified an intronic SNP in the DCC gene that reached genome-wide significance for ASD following MTAG analysis (P-value 2.69E-08) (Wu et al., 2020). Other SNPs in this gene have previously been shown to reach genome-wide significance for association with depression (Wray et al., 2018; Howard et al., 2019).

Molecular Function

This gene encodes a netrin 1 receptor. The transmembrane protein is a member of the immunoglobulin superfamily of cell adhesion molecules, and mediates axon guidance of neuronal growth cones towards sources of netrin 1 ligand. The cytoplasmic tail interacts with the tyrosine kinases Src and focal adhesion kinase (FAK, also known as PTK2) to mediate axon attraction.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Multi-trait analysis for genome-wide association study of five psychiatric disorders
ASD
Positive Association
Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions
Depression
Positive Association
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Depression
Support
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1193R001a 
 missense_variant 
 c.526A>G 
 p.Asn176Asp 
 Familial 
 Maternal 
  
 GEN1193R001b 
 missense_variant 
 c.3797C>T 
 p.Pro1266Leu 
 Familial 
 Paternal 
  
 GEN1193R002 
 stop_gained 
 c.2869G>T 
 p.Glu957Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1193R003 
 missense_variant 
 c.2260G>A 
 p.Val754Met 
 Unknown 
  
 Unknown 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1193C001 
 intron_variant 
 rs6508210 
 c.1911+5224A>C 
  
 46,350 ASD cases, 65,967 schizophrenia cases, 41,653 bipolar disorder cases, 55,374 ADHD cases, and 688,809 cases with depression 
 Discovery 
 GEN1193C002 
 intron_variant 
 rs11663393 
 c.1261+22196G>A 
  
 135,458 MDD cases and 344,901 controls from 7 cohorts (PGC, deCODE, GenScotland, GERA, iPSYCH, UK Biobank, and 23andMe) 
 Discovery 
 GEN1193C003 
 intron_variant 
 rs7227069 
 c.1722+68G>A 
  
 Meta-analysis cohort of 246,363 MDD cases and 561,190 controls (23andMe, PGC, and UKBiobank), followed by an independent replication cohort of 414,055 cases and 892,299 controls (23andMe) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
18
Duplication
 2
 
18
Duplication
 2
 
18
Duplication
 1
 
18
Duplication
 2
 
18
Deletion-Duplication
 14
 
18
Deletion
 2
 
18
Deletion
 5
 

No Animal Model Data Available

No PIN Data Available
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