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Relevance to Autism

A de novo missense variant with an MPC score > 2 was identified in the CYFIP2 gene in a Korean ASD proband in Kim et al., 2024; this gene was subsequently classified as an ASD candidate gene in males following a combined TADA analysis consisting of the Korean ASD cohort described in Kim et al., 2024 in addition to the Simons Simplex Collection and the SPARK cohort. A de novo loss-of-function variant and seven de novo missense variants, including three missense variants with MPC scores>2, were previously identified in the CYFIP2 gene in ASD probands from the Autism Sequencing Consortium and the SPARK cohort (Satterstrom et al., 2020; Zhou et al., 2022; Fu et al., 2022; Trost et al., 2022). Heterozygous variants in CYFIP2 are also responsible for developmental and epileptic encephalopathy-65 (DEE65; OMIM 618008); Zweier et al., 2019 reported that, of the 12 individuals with de novo CYFIP2 variants who presented with developmental delay/intellectual disability and epilepsy in their cohort, one also presented with autism spectrum disorder while another presented with autistic features. Han et al., 2015 found that Cyfip2(+/-) mice exhibited behavioral phenotypes similar to Fmr1-null (Fmr1(-/y)) mice, an animal model of Fragile X syndrome.

Molecular Function

Predicted to enable small GTPase binding activity. Involved in several processes, including activation of cysteine-type endopeptidase activity; cell-cell adhesion; and regulation of postsynapse assembly. Located in perinuclear region of cytoplasm and synapse. Part of SCAR complex. Implicated in developmental and epileptic encephalopathy 65.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Fragile X-like behaviors and abnormal cortical dendritic spines in cytoplasmic FMR1-interacting protein 2-mutant mice
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Molecular Dissection of Neurodevelopmental Disorder-Causing Mutations in CYFIP2
DD, ID, epilepsy/seizures
ASD, ADHD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Massively parallel characterization of non-coding de novo mutations in autism spectrum disorder
ASD
Support
Spatially clustering de novo variants in CYFIP2, encoding the cytoplasmic FMRP interacting protein 2, cause intellectual disability and seizures
Developmental and epileptic encephalopathy-65, DD,
ASD or autistic features, ADHD
Support
The Genetic Puzzle of Cerebral Palsy: Results of a Monocentric Study
Cerebral palsy
ASD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1473R001 
 missense_variant 
 c.1292C>T 
 p.Ala431Val 
 De novo 
  
  
 GEN1473R002 
 synonymous_variant 
 c.354G>A 
 p.Glu118= 
 De novo 
  
  
 GEN1473R003 
 missense_variant 
 c.3682G>A 
 p.Val1228Met 
 De novo 
  
  
 GEN1473R004 
 synonymous_variant 
 c.1083C>T 
 p.Ser361= 
 De novo 
  
 Simplex 
 GEN1473R005 
 missense_variant 
 c.1316G>A 
 p.Arg439His 
 De novo 
  
  
 GEN1473R006 
 missense_variant 
 c.1363G>A 
 p.Ala455Thr 
 De novo 
  
  
 GEN1473R007 
 stop_gained 
 c.1900C>T 
 p.Arg634Ter 
 De novo 
  
  
 GEN1473R008 
 missense_variant 
 c.2420C>T 
 p.Thr807Met 
 De novo 
  
  
 GEN1473R009 
 missense_variant 
 c.2506G>A 
 p.Gly836Ser 
 De novo 
  
  
 GEN1473R010 
 missense_variant 
 c.1442C>T 
 p.Ala481Val 
 De novo 
  
  
 GEN1473R011 
 missense_variant 
 c.2414G>A 
 p.Arg805Gln 
 De novo 
  
  
 GEN1473R012 
 missense_variant 
 c.259C>T 
 p.Arg87Cys 
 De novo 
  
  
 GEN1473R013 
 splice_site_variant 
 c.3669+1G>T 
 p.? 
 De novo 
  
  
 GEN1473R014 
 missense_variant 
 c.259C>T 
 p.Arg87Cys 
 De novo 
  
  
 GEN1473R015 
 missense_variant 
 c.259C>T 
 p.Arg87Cys 
 De novo 
  
  
 GEN1473R016 
 missense_variant 
 c.2174A>G 
 p.Gln725Arg 
 De novo 
  
  
 GEN1473R017 
 missense_variant 
 c.1992C>G 
 p.Ile664Met 
 De novo 
  
  
 GEN1473R018 
 missense_variant 
 c.1993G>A 
 p.Glu665Lys 
 De novo 
  
  
 GEN1473R019 
 missense_variant 
 c.259C>T 
 p.Arg87Cys 
 De novo 
  
  
 GEN1473R020 
 missense_variant 
 c.1992C>G 
 p.Ile664Met 
 De novo 
  
  
 GEN1473R021 
 missense_variant 
 c.1363G>C 
 p.Ala455Pro 
 De novo 
  
  
 GEN1473R022 
 missense_variant 
 c.2170G>C 
 p.Asp724His 
 De novo 
  
  
 GEN1473R023 
 missense_variant 
 c.322T>C 
 p.Tyr108His 
 De novo 
  
  
 GEN1473R024 
 missense_variant 
 c.1992C>G 
 p.Ile664Met 
 De novo 
  
  
 GEN1473R025 
 intron_variant 
 c.-23-690C>G 
  
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 

No Animal Model Data Available

 

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