Summary Statistics:
ASD Reports: 14
Recent Reports: 1
Annotated variants: 46
Associated CNVs: 5
Evidence score: 3
Gene Score: 2
Relevance to Autism
A rare G>A mutation within the human accelerated region HAR426, for which existing ChIA-Pet data showed an interaction with the dosage-sensitive CUX1 promoter 200 kb distal, was homozygous in three individuals presenting with ASD and ID from two unrelated consanguineous families; functional analysis of this variant in luciferase reporter assays demonstrated that while HAR426 joined to the human CUX1 promoter showed strong enhancer activity (1.5-fold increase), the G>A variant boosted activity over 3-fold (Doan et al., 2016). In the same report, overexpression of CUX1 in cortical cultured neurons was shown to increase synaptic spine density and spine head area in an activity-dependent manner. CUX1 was found to bind to a transcriptional activator containing an ASD-associated intronic haplotype in the EN2 gene (Choi et al., 2012).
Molecular Function
The protein encoded by this gene is a member of the homeodomain family of DNA binding proteins. It may regulate gene expression, morphogenesis, and differentiation and it may also play a role in the cell cycle progession.
References
Primary
Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
ASD
Support
Haploinsufficiency of CUX1 Causes Nonsyndromic Global Developmental Delay With Possible Catch-up Development.
DD
ID, ASD
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Cut-like homeobox 1 and nuclear factor I/B mediate ENGRAILED2 autism spectrum disorder-associated haplotype function.
Support
CUX2 deficiency causes facilitation of excitatory synaptic transmission onto hippocampus and increased seizure susceptibility to kainate
Epilepsy/seizures
ASD, DD, ID
Support
Cux1 and Cux2 regulate dendritic branching, spine morphology, and synapses of the upper layer neurons of the cortex.
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Recent Recommendation
DD, ID
ASD, ADHD, epilepsy/seizures
GEN847R001a
intergenic_variant
G>A
Familial
Both parents
Multiplex
GEN847R002a
intergenic_variant
G>A
Familial
Both parents
Simplex
GEN847R003
missense_variant
c.902T>C
p.Val301Ala
De novo
GEN847R004
stop_gained
c.61C>T
p.Gln21Ter
De novo
Simplex
GEN847R005
frameshift_variant
c.2398del
p.Gln800ArgfsTer19
De novo
Simplex
GEN847R006
stop_gained
c.2617C>T
p.Gln873Ter
De novo
Simplex
GEN847R007
frameshift_variant
c.3197dup
p.Ala1067CysfsTer3
Familial
Maternal
Multiplex
GEN847R008
frameshift_variant
c.3783_3784dup
p.Leu1262ArgfsTer10
De novo
GEN847R009
copy_number_loss
De novo
GEN847R010
copy_number_loss
De novo
GEN847R011
missense_variant
c.115G>A
p.Glu39Lys
Unknown
Simplex
GEN847R012
missense_variant
c.1943G>T
p.Ser648Ile
Unknown
GEN847R013
synonymous_variant
c.3081C>T
p.Pro1027%3D
Unknown
GEN847R014
missense_variant
c.3161C>T
p.Ser1054Leu
Unknown
GEN847R015
missense_variant
c.3161C>T
p.Ser1054Leu
Unknown
GEN847R016
missense_variant
c.3281C>T
p.Ala1094Val
Unknown
Simplex
GEN847R017
missense_variant
c.3815G>A
p.Arg1272Gln
Unknown
GEN847R018
missense_variant
c.4172C>T
p.Thr1391Ile
Unknown
Simplex
GEN847R019
missense_variant
c.2839G>A
p.Glu947Lys
De novo
Simplex
GEN847R020
missense_variant
c.3986C>G
p.Ala1329Gly
De novo
Simplex
GEN847R021
frameshift_variant
c.1702del
p.Ala568ProfsTer8
Familial
Paternal
Simplex
GEN847R022
missense_variant
c.1588A>C
p.Lys530Gln
Familial
Multiplex
GEN847R023
missense_variant
c.4288G>T
p.Glu1430Ter
De novo
GEN847R024
frameshift_variant
c.3461del
p.Asn1154ThrfsTer12
De novo
GEN847R025
splice_site_variant
c.63+1G>A
Unknown
GEN847R026
splice_site_variant
c.223-2A>G
De novo
Simplex
GEN847R027
stop_gained
c.571C>T
p.Gln191Ter
De novo
Simplex
GEN847R028
missense_variant
c.795G>C
p.Arg265Ser
De novo
Simplex
GEN847R029
stop_gained
c.985G>T
p.Glu329Ter
Familial
Maternal
Simplex
GEN847R030
frameshift_variant
c.1091del
p.Glu364GlyfsTer2
Familial
Paternal
Extended multiplex
GEN847R031
stop_gained
c.1606C>T
p.Gln536Ter
De novo
Simplex
GEN847R032
frameshift_variant
c.1609del
p.Ser537AlafsTer39
De novo
Simplex
GEN847R033
frameshift_variant
c.1626del
p.Met543TrpfsTer33
De novo
Simplex
GEN847R034
stop_gained
c.1720C>T
p.Gln574Ter
De novo
Simplex
GEN847R035
frameshift_variant
c.2902del
p.Ala968ProfsTer35
Familial
Paternal
Simplex
GEN847R036
frameshift_variant
c.3334del
p.Gln1112SerfsTer19
De novo
Simplex
GEN847R037
frameshift_variant
c.3533_3536del
p.Arg1178ProfsTer9
Familial
Maternal
Simplex
GEN847R038
stop_gained
c.3596G>A
p.Trp1199Ter
De novo
Simplex
GEN847R039
missense_variant
c.3634A>T
p.Met1212Leu
De novo
Simplex
GEN847R040
frameshift_variant
c.3819del
p.Tyr1274IlefsTer21
De novo
Simplex
GEN847R041
missense_variant
c.4064C>T
p.Thr1355Ile
De novo
Simplex
GEN847R042
frameshift_variant
c.4321dup
p.Glu1441GlyfsTer121
Unknown
Not maternal
GEN847R043
frameshift_variant
c.4440_4448del
p.Ser1482_Asp1484del
De novo
Simplex
GEN847R044
copy_number_loss
Familial
Maternal
Simplex
GEN847R045
translocation
p.Glu307_Glu1055delinsThrLeuGluAlaSerPheSerProAlaLysTrpAlaTer
De novo
Simplex
GEN847R046
inversion
p.?
De novo
Simplex
No Common Variants Available
7
Deletion-Duplication
28
No Animal Model Data Available
No Interactions Available