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Relevance to Autism

To evaluate the effects of ASD-associated de novo variants in a family relative context, Kim et al., 2025 defined within-family standardized deviations (WFSD) by subtracting phenotype scores of unaffected family members and standardizing the result in 21,735 families from three ASD cohorts (the Korean Autism cohort, the Simons Simplex Collection, and SPARK); their analysis found that more genes enriched in de novo damaging protein-truncating variants (LOEUF < 0.37) and missense variants (MPC > 2) were identified using WFSD compared to raw phenotype scores, with 38 genes uniquely identified in the WFSD group, including the CTPS1 gene. A de novo loss-of-function variant in the CTPS1 gene was reported in a MSSNG proband in Zhou et al., 2022, while a de novo missense variant with a MPC > 2 was identified in a Korean ASD proband in Kim et al., 2024.

Molecular Function

This gene encodes an enzyme responsible for the catalytic conversion of UTP (uridine triphosphate) to CTP (cytidine triphospate). This reaction is an important step in the biosynthesis of phospholipids and nucleic acids. Activity of this proten is important in the immune system, and loss of function of this gene has been associated with immunodeficiency.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Evaluation of familial phenotype deviation to measure the impact of de novo mutations in autism
ASD
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1515R001 
 frameshift_variant 
 c.55del 
 p.Ile19LeufsTer16 
 De novo 
  
 Simplex 
 GEN1515R002 
 missense_variant 
 c.221A>G 
 p.Tyr74Cys 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 16
 
1
Duplication
 1
 
1
Deletion
 1
 
1
Duplication
 1
 
1
Deletion
 3
 

No Animal Model Data Available

 

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