Summary Statistics:
ASD Reports: 41
Recent Reports: 4
Annotated variants: 127
Associated CNVs: 1
Evidence score: 4
Gene Score: 3
Relevance to Autism
Two de novo variants (one nonsense, one missense) in the CTNNB1 gene were identified in unrelated simplex ASD cases (PMIDs 22495309 and 23160955). Three de novo LoF variants in CTNNB1 (two frameshift, one nonsense) have been identified in unrelated patients with a similar phenotypic profile: severe ID, absent or very limited speech, microcephaly, and spasticity (PMIDs 23033978 and 24614104). De novo LoF variants in CTNNB1 were identified in a total of six patients from the Deciphering Developmental Disorders study (PMID 25533962). A de novo LoF variant in CTNNB1 was identifed in a proband from the Pediatric Cardiac Genetics Consortium who presented with ASD, developmental delay, and intellectual disability in addition to congenital heart disease (Homsy et al., 2015). Conditional knockout mice with CTNNB1-deficient parvalbumin interneurons exhibited significantly impaired object recognition and social interactions, elevated repetitive behaviors, and increased anxiety (Dong et al., 2016). Two de novo protein-truncating variants in CTNNB1 were identified in ASD probands from the Autism Sequencing Consortium in Satterstrom et al., 2020; two protein-truncating variants in this gene were also observed in case samples from the Danish iPSYCH study in the same report. TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified CTNNB1 as a candidate gene with a false discovery rate (FDR) 0.01. A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified CTNNB1 as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).
Molecular Function
The protein encoded by this gene is part of a complex of proteins that constitute adherens junctions (AJs). AJs are necessary for the creation and maintenance of epithelial cell layers by regulating cell growth and adhesion between cells. The encoded protein also anchors the actin cytoskeleton and may be responsible for transmitting the contact inhibition signal that causes cells to stop dividing once the epithelial sheet is complete. Finally, this protein binds to the product of the APC gene, which is mutated in adenomatous polyposis of the colon.
References
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder.
ASD
Support
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
ASD
Support
Neurodevelopmental disorder with spastic diplegia
ASD, stereotypy
Support
CTNNB1-related neurodevelopmental disorder in a Chinese population: A case series
DD, ID
Support
Altered proliferation and networks in neural cells derived from idiopathic autistic individuals.
ASD
Support
Improved diagnostic yield compared with targeted gene sequencing panels suggests a role for whole-genome sequencing as a first-tier genetic test.
DD, microcephaly
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Epilepsy, ASD
Support
Neurodevelopmental disorder with spastic diplegia
Stereotypy
Support
Exome sequencing in paediatric patients with movement disorders
ID
Support
A de novo CTNNB1 nonsense mutation associated with syndromic atypical hyperekplexia, microcephaly and intellectual disability: a case report.
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Exome sequencing identifies a de novo mutation of CTNNB1 gene in a patient mainly presented with retinal detachment, lens and vitreous opacities, m...
DD, microcephaly
Support
Missense variants in CTNNB1 can be associated with vitreoretinopathy-Seven new cases of CTNNB1-associated neurodevelopmental disorder including a previously unreported retinal phenotype
Neurodevelopmental disorder with spastic diplegia
ASD, stereotypy
Support
Comprehensive molecular testing in patients with high functioning autism spectrum disorder.
ASD
Support
The extended clinical and genetic spectrum of CTNNB1-related neurodevelopmental disorder
DD
ID, autistic features
Support
A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology.
Psychomotor retardation, microcephaly
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
Clinical features associated with CTNNB1 de novo loss of function mutations in ten individuals.
DD, ID
Hypotonia, spasticity, microcephaly
Support
Neurodevelopmental disorder with spastic diplegia
Autistic features, ADHD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
A new intellectual disability syndrome caused by CTNNB1 haploinsufficiency.
ID
Support
Bi-allelic mutation of CTNNB1 causes a severe form of syndromic microphthalmia
DD
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Autosomal dominant mental retardation-19
DD, ID, microcephaly
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
DD, ID
Autistic features
Support
Dominant -catenin mutations cause intellectual disability with recognizable syndromic features.
ID
Autistic features
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Recent Recommendation
Hepatocyte Growth Factor Modulates MET Receptor Tyrosine Kinase and -Catenin Functional Interactions to Enhance Synapse Formation.
Recent Recommendation
Deletion of CTNNB1 in inhibitory circuitry contributes to autism-associated behavioral defects.
Recent Recommendation
De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies.
Congenital heart disease (CHD)
ASD, DD, ID
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
GEN472R001
missense_variant
c.1652C>T
p.Thr551Met
De novo
Simplex
GEN472R002
stop_gained
c.1512G>A
p.Trp504Ter
De novo
Simplex
GEN472R003
copy_number_loss
De novo
Simplex
GEN472R004
frameshift_variant
c.1272_1275del
p.Ser425ThrfsTer11
De novo
GEN472R005
stop_gained
c.925C>T
p.Gln309Ter
Unknown
Not maternal
GEN472R006
stop_gained
c.1543C>T
p.Arg515Ter
De novo
GEN472R007
frameshift_variant
c.705dup
p.Gly236ArgfsTer35
De novo
Simplex
GEN472R008
stop_gained
c.1981C>T
p.Arg661Ter
De novo
Simplex
GEN472R009
frameshift_variant
c.1041_1044del
p.Val349AlafsTer9
De novo
Simplex
GEN472R010
frameshift_variant
c.998dup
p.Tyr333Ter
De novo
Simplex
GEN472R011
stop_gained
c.1603C>T
p.Arg535Ter
De novo
Simplex
GEN472R012
frameshift_variant
c.1690del
p.Val564SerfsTer6
De novo
Simplex
GEN472R013
splice_site_variant
c.242-6T>G
De novo
GEN472R014
frameshift_variant
c.1685del
p.Glu562GlyfsTer8
De novo
GEN472R015
missense_variant
c.2255G>C
p.Gly752Ala
Unknown
GEN472R016
stop_gained
c.232C>T
p.Gln78Ter
De novo
Simplex
GEN472R017
stop_gained
c.226C>T
p.Gln76Ter
Unknown
GEN472R018
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R019
stop_gained
c.607C>T
p.Gln203Ter
De novo
GEN472R020
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R021
frameshift_variant
c.1925_1926del
p.Glu642GlyfsTer15
De novo
Simplex
GEN472R022
stop_gained
c.1981C>T
p.Gln661Ter
De novo
Simplex
GEN472R023
stop_gained
c.1801C>T
p.Gln601Ter
De novo
GEN472R024
stop_gained
c.1603C>T
p.Arg535Ter
De novo
GEN472R025
stop_gained
c.999C>G
p.Tyr333Ter
De novo
GEN472R026
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R027
frameshift_variant
c.802_809del
p.Gly268AsnfsTer22
De novo
GEN472R028
stop_gained
c.1612C>T
p.Gln538Ter
De novo
GEN472R029
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R030
stop_gained
c.1672C>T
p.Arg558Cys
De novo
Simplex
GEN472R031
frameshift_variant
c.1064_1067del
p.Pro355LeufsTer3
De novo
GEN472R032
missense_variant
c.1127G>A
p.Arg376His
De novo
Simplex
GEN472R033
missense_variant
c.1723G>A
p.Gly575Arg
De novo
GEN472R034
stop_gained
c.1287C>A
p.Cys429Ter
Unknown
Extended multiplex
GEN472R035
frameshift_variant
c.1043_1044del
p.Ser348CysfsTer4
De novo
Simplex
GEN472R036
frameshift_variant
c.1930del
p.Leu644PhefsTer35
De novo
Simplex
GEN472R037
synonymous_variant
c.1981C>A
p.Arg661=
De novo
Simplex
GEN472R038
splice_region_variant
c.1525-3C>G
De novo
Simplex
GEN472R039
intron_variant
c.1186-18C>T
De novo
Simplex
GEN472R040
frameshift_variant
c.429del
p.Asp144MetfsTer13
De novo
GEN472R041
splice_site_variant
c.1081+1G>C
Unknown
GEN472R042
stop_gained
c.1420C>T
p.Arg474Ter
Unknown
GEN472R043
missense_variant
c.1013G>C
p.Trp338Ser
Unknown
GEN472R044
missense_variant
c.2017C>T
p.Arg673Trp
Unknown
GEN472R045
missense_variant
c.1693C>T
p.Arg565Cys
Unknown
GEN472R046
stop_gained
c.268C>T
p.Arg90Ter
Unknown
GEN472R047
frameshift_variant
c.1740_1743del
p.Ala581GlyfsTer12
Unknown
GEN472R048
frameshift_variant
c.664del
p.Ser222ProfsTer20
Unknown
GEN472R049
frameshift_variant
c.1925_1926del
p.Glu642ValfsTer5
Unknown
GEN472R050
splice_site_variant
c.241+1G>A
Unknown
GEN472R051
stop_gained
c.283C>T
p.Arg95Ter
Unknown
GEN472R052
frameshift_variant
c.2046_2047del
p.Phe683GlnfsTer9
Unknown
GEN472R053
frameshift_variant
c.998dup
p.Tyr333Ter
Unknown
GEN472R054
missense_variant
c.1582C>T
p.Arg528Cys
Unknown
GEN472R055
missense_variant
c.1457G>A
p.Arg486His
Unknown
GEN472R056
stop_gained
c.1962T>A
p.Tyr654Ter
De novo
GEN472R057
frameshift_variant
c.776_777del
p.Leu259ProfsTer11
De novo
GEN472R058
missense_variant
c.1723G>A
p.Gly575Arg
De novo
GEN472R059
inframe_indel
c.1016_1025delinsT
p.Thr339_Arg342delinsIle
De novo
GEN472R060
frameshift_variant
c.1665dup
p.Thr556AspfsTer16
De novo
GEN472R061
frameshift_variant
c.214_215del
p.Gln72ValfsTer9
De novo
GEN472R062
frameshift_variant
c.1005del
p.Lys335AsnfsTer10
De novo
GEN472R063
stop_gained
c.367C>T
p.Gln123Ter
De novo
GEN472R064
frameshift_variant
c.2092_2096dup
p.Ile700LeufsTer37
Familial
Maternal
GEN472R065
splice_site_variant
c.242-1G>C
Unknown
GEN472R066
frameshift_variant
c.1849dup
p.Val617GlyfsTer4
Unknown
GEN472R067
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
GEN472R068
frameshift_variant
c.1434_1435insC
p.Glu479ArgfsTer18
Unknown
GEN472R069
stop_gained
c.493C>T
p.Gln165Ter
Unknown
GEN472R070
stop_gained
c.367C>T
p.Gln123Ter
Unknown
GEN472R071
frameshift_variant
c.1105_1109del
p.His369AspfsTer24
Unknown
GEN472R072
missense_variant
c.646G>A
p.Gly216Arg
De novo
Simplex
GEN472R073a
missense_variant
c.884C>G
p.Ala295Gly
Familial
Both parents
Simplex
GEN472R074
missense_variant
c.82C>G
p.Gln28Glu
Unknown
GEN472R075
missense_variant
c.2117C>A
p.Pro706His
Unknown
GEN472R076
stop_gained
c.163G>T
p.Glu55Ter
De novo
GEN472R077
frameshift_variant
c.181del
p.Gln61LysfsTer19
De novo
GEN472R078
frameshift_variant
c.863_864insG
p.Thr289AsnfsTer4
De novo
GEN472R079
copy_number_loss
Deletionof exons 8-15 of the CTNNB1 gene.
De novo
GEN472R080
splice_site_variant
c.1082-1G>C
De novo
GEN472R081
stop_gained
c.1148G>A
p.Trp383Ter
De novo
GEN472R082
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R083
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN472R084
stop_gained
c.1867C>T
p.Gln623Ter
De novo
GEN472R085
stop_gained
c.1867C>T
p.Gln623Ter
De novo
GEN472R086
frameshift_variant
c.1749dup
p.Val584CysfsTer25
De novo
GEN472R087
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R088
stop_gained
c.1543C>T
p.Arg515Ter
De novo
GEN472R089
frameshift_variant
c.1398_1399del
p.Ala467SerfsTer29
De novo
GEN472R090
stop_gained
c.1603C>T
p.Arg535Ter
De novo
GEN472R091
missense_variant
c.1613T>G
p.Leu538Arg
De novo
GEN472R092
frameshift_variant
c.1925_1926del
p.Glu642ValfsTer5
De novo
Simplex
GEN472R093
missense_variant
c.1607T>G
p.Leu536Arg
De novo
Simplex
GEN472R094
frameshift_variant
c.677_678dup
p.Gly227ArgfsTer16
De novo
GEN472R095
frameshift_variant
c.680dup
p.Leu229ThrfsTer5
De novo
GEN472R096
frameshift_variant
c.811del
p.Met271TrpfsTer5
De novo
GEN472R097
frameshift_variant
c.977del
p.Asn326IlefsTer2
De novo
GEN472R098
stop_gained
c.976_979del
p.Asn326Ter
De novo
GEN472R099
stop_gained
c.998dup
p.Tyr333Ter
De novo
GEN472R100
stop_gained
c.999del
p.Tyr333Ter
De novo
GEN472R101
stop_gained
c.999C>A
p.Tyr333Ter
De novo
GEN472R102
copy_number_loss
c.(1081+1_1082-1)_(2346+?)del
p.?
De novo
GEN472R103
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R104
stop_gained
c.1420C>T
p.Arg474Ter
De novo
GEN472R105
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN472R106
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN472R107
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN472R108
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN472R109
frameshift_variant
c.1852del
p.Leu618SerfsTer23
De novo
GEN472R110
frameshift_variant
c.1874del
p.Lys625ArgfsTer16
De novo
GEN472R111
frameshift_variant
c.1925_1926del
p.Glu642ValfsTer5
De novo
GEN472R112
stop_gained
c.2089G>T
p.Gly697Ter
Unknown
GEN472R113
frameshift_variant
c.1586dup
p.Gln530AlafsTer42
De novo
Multiplex
GEN472R114
stop_gained
c.257dup
p.Tyr86Ter
De novo
Simplex
GEN472R115
frameshift_variant
c.680dup
p.Leu229ThrfsTer5
Unknown
GEN472R116
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
GEN472R117
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
GEN472R118
copy_number_loss
c.1081+3_1083del
Unknown
GEN472R119
stop_gained
c.1420C>T
p.Arg474Ter
Unknown
GEN472R120
stop_gained
c.998dup
p.Tyr333Ter
Unknown
GEN472R121
frameshift_variant
c.977del
p.Asn326IlefsTer2
Unknown
GEN472R122
frameshift_variant
c.1874del
p.Lys625ArgfsTer16
Unknown
GEN472R123
stop_gained
c.976_979del
p.Asn326Ter
Unknown
GEN472R124
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
GEN472R125
frameshift_variant
c.1904dup
p.Ala636SerfsTer12
De novo
Simplex
GEN472R126
frameshift_variant
c.911dup
p.Leu304PhefsTer15
Familial
Paternal
GEN472R127
stop_gained
c.1759C>T
p.Arg587Ter
Unknown
No Common Variants Available
Summary Statistics:
# of Reports: 1
# of Models: 1
Model Summary
This model specifically deletes CTNNB1 in parvalbumin interneurons.
References
Primary
Deletion of CTNNB1 in inhibitory circuitry contributes to autism-associated behavioral defects.
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Conditional deletion of exons 2-6 of CTNNB1 using Pvalb-Cre (parvalbumin-Cre) from parvalbumin positive interneurons
Allele Type: Conditional loss-of-function
Strain of Origin: 129/Sv
Genetic Background: 129/Sv
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Neuronal number: interneurons1
Increased
View More
Description: Density of pv+ neurons in the prefrontal cortex was significantly higher in ctnnb1 cko mice; however, the percentages of pv+ neurons in different hippocampal regions, the amygdala, and the hypothalamus were not changed suggesting the alteration is region-specific;
Exp Paradigm: Pv
Immunohistochemistry
2 months
Decreased
View More
Description: In ctnnb1 cko mice c-fos staining was significantly reduced in the cortex, but not in the dentate gyrus and the amygdala, suggesting an increased inhibition in the cortex, which may contribute to ctnnb1 ko-mediated behavioral changes;
Exp Paradigm: C-fos immunohistochemistry
Immunohistochemistry
2 months
Increased
View More
Description: Cko mice significantly increased their head-dipping behavior especially at the center region of the plus maze apparatus
Exp Paradigm: Elevated plus maze test
Elevated plus maze test
2 months
Self grooming: perseveration1
Increased
View More
Description: Ctnnb1 cko mice had significantly more grooming time than their control littermates
Exp Paradigm: Measured the total grooming time in a testing session of 25 minutes
Grooming behavior assessments
2 months
Decreased
View More
Description: When presented with an unfamiliar mouse, ctnnb1flox/flox mice preferred to interact with the unfamiliar mouse with higher interacting time and frequency; pv-cre; ctnnb1flox/flox mice failed to show social novelty behavior;
Exp Paradigm: Three-chamber social approach test;
Three-chamber social approach test
2 months
Decreased
View More
Description: Pv-cre; ctnnb1flox/flox mice performed worse on nest building test than control mice at 1 or 24 hours after setting up the nesting;
Exp Paradigm: Nest building assay;
Nest building assay
2 months
Increased
View More
Description: Significant decreases detected on center duration time, center distance traveled, frequency and increased latency of center entry; it took much longer for ctnnb1 cko mice to enter open arms;
Exp Paradigm: Open field test; elevated plus maze test;-open field test
Open field test
2 months
Increased
View More
Description: Significant decreases detected on center duration time, center distance traveled, frequency and increased latency of center entry; it took much longer for ctnnb1 cko mice to enter open arms;
Exp Paradigm: Open field test; elevated plus maze test;- elevated plus maze test
Elevated plus maze test
2 months
Increased
View More
Description: Within 4 training days, ctnnb1 cko mice took less time and swam shorter distances to reach the platform; they also showed a higher percentage of successful rate of finding the hidden-platform within 60 seconds; these indicate pv-cre; ctnnb1flox/flox mice can memorize the position of the platform in relation to spatial cues with higher accuracy;
Exp Paradigm: Morris water maze test;
Morris water maze test
2 months
Object recognition memory1
Decreased
View More
Description: After 24 hours, the animals were retested when novel object 1 was paired with novel object 2; control mice spent significantly more time with the novel object 2 suggesting that they retained long-term memory; however, pv-cre; ctnnb1flox/flox mice had similar interactive durations and frequencies between novel object 2 and the familiar object; the nor test indicated that ctnnb1 cko from pv+ neurons affected the long-term recognition but not the short-term memory;
Exp Paradigm: Novel object recognition test;
Novel object recognition test
2 months
Cued or contextual fear conditioning: memory of cue: long term recall1
Decreased
View More
Description: Memory extinction was impaired as new memories cannot be formed in ctnnb1 cko mice;
Exp Paradigm: Fear conditioning test
Fear conditioning test
2 months
Decreased
View More
Description: Ctnnb1 expressions was deleted in almost all pv+ neurons
Exp Paradigm: Ctnnb1 and parvalbumin co- immunohistochemistry;
Immunohistochemistry
2 months
No change
Tail suspension test
2 months
Cued or contextual fear conditioning1
No change
Fear conditioning test
2 months
Object recognition memory1
No change
Novel object recognition test
2 months
General locomotor activity1
No change
Open field test
2 months
Motor coordination and balance1
No change
Accelerating rotarod test
2 months
Neuronal number: interneurons1
No change
Immunohistochemistry
3 weeks
No change
Marble-burying test
2 months
No change
Elevated plus maze test
2 months
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Maternal behavior, Physiological parameters, Seizure, Sensory
Summary Statistics:
Total Interactions: 235
Total Publications: 155
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ABL1
c-abl oncogene 1, non-receptor tyrosine kinase
25
P00519
IP/WB; Y2H; High-throughput fluorescence polarization interaction analysis assay
Chen R , et al. 2013
AHR
aryl hydrocarbon receptor
196
P35869
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Kawajiri K , et al. 2009
AJAP1
Adherens junction-associated protein 1
55966
Q9UKB5
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Bharti S , et al. 2003
AKT1
v-akt murine thymoma viral oncogene homolog 1
207
P31749
Biochemical activity; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
AMOT
angiomotin
154796
Q4VCS5
MS; LC-MS/MS; High-throughput fluorescence polarization interaction analysis assay
Couzens AL , et al. 2013
APC
adenomatous polyposis coli
324
P25054
X-ray crystallography; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Xing Y , et al. 2004
APC
adenomatous polyposis coli
324
P25054
IP/WB
Cai J , et al. 2015
APC
adenomatous polyposis coli
324
P25054
IP/WB; in vitro binding assay; Peptide mapping
Su LK , et al. 1993
APC2
adenomatosis polyposis coli 2
10297
O95996
IP/WB
Schneikert J , et al. 2013
APP
amyloid beta (A4) precursor protein
351
P05067
Reconstituted complex; ProtoArray; High-throughput fluorescence polarization interaction analysis assay
Olh J , et al. 2011
AR
androgen receptor
367
P10275
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Amir AL , et al. 2003
ASH2L
ash2 (absent, small, or homeotic)-like (Drosophila)
9070
Q9UBL3
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Sierra J , et al. 2006
ATF2
activating transcription factor 2
1386
P15336
MS
Lau E , et al. 2012
AXIN1
axin 1
8312
O15169
IP/WB; Nano-LC/MS/MS; High-throughput fluorescence polarization interaction analysis assay
Fei C , et al. 2013
AXIN1
axin 1
8312
O15169
IP; LC-MS/MS; IP/WB
Yu N , et al. 2015
BCL3
B-cell CLL/lymphoma 3
602
P20749
IP/WB
Kim JH , et al. 2005
BOC
BOC cell adhesion associated, oncogene regulated
91653
Q96DN7
IP/WB
Kang JS , et al. 2003
BRCA1
breast cancer 1, early onset
672
P38398
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Li H , et al. 2010
BTF3
basic transcription factor 3
689
P20290
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
BTRC
beta-transducin repeat containing E3 ubiquitin protein ligase
8945
B2R8L3
IP/WB
Chen CH , et al. 2012
C6ORF26
Suppressor APC domain-containing protein 1
401251
Q5SSQ6-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
CA9
Carbonic anhydrase 9
768
Q16790
IP/WB
Svastov E , et al. 2003
CACNA1G
calcium channel, voltage-dependent, T type, alpha 1G subunit
8913
O43497
Luciferase reporter assay
Wisniewska MB , et al. 2010
CAV1
caveolin 1, caveolae protein, 22kDa
857
Q03135
IP/WB
Conde-Perez A , et al. 2015
CBL
Cas-Br-M (murine) ecotropic retroviral transforming sequence
867
P22681
Biochemical activity; in vitro ubiquitination assay; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Chitalia V , et al. 2013
CBY1
Protein chibby homolog 1
25776
Q9Y3M2
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Takemaru K , et al. 2003
CCNA1
Cyclin-A1
8900
P78396
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Park CS , et al. 2004
CCNA2
cyclin A2
890
P20248
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Park CS , et al. 2004
CCNE1
cyclin E1
898
P24864
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Park CS , et al. 2004
CDC27
cell division cycle 27
996
G3V1C4
Reconstituted complex; MS; IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Sierra J , et al. 2006
CDC73
cell division cycle 73
79577
Q6P1J9
IP/WB; MS; High-throughput fluorescence polarization interaction analysis assay
Takahashi A , et al. 2011
CDH1
cadherin 1, type 1, E-cadherin (epithelial)
999
P12830
IP/WB
Smyth D , et al. 2012
CDH1
cadherin 1, type 1, E-cadherin (epithelial)
999
P12830
IP/WB
Decarlo L , et al. 2015
CDH10
cadherin 10, type 2 (T2-cadherin)
1008
Q9Y6N8
IP/WB
Shimoyama Y , et al. 2000
CDH11
Cadherin-11
1009
P55287
IP/WB
Langhe RP , et al. 2016
CDH2
cadherin 2, type 1, N-cadherin (neuronal)
1000
P19022
MS; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Straub BK , et al. 2003
cdh3-b
Beta-catenin-interacting protein 1
594865
Q9NSA3
GST; IP/WB
Graham TA , et al. 2002
CDH5
Cadherin-5
1003
P33151
IP/WB
Margariti A , et al. 2010
CDH5
Cadherin-5
1003
P33151
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDH8
cadherin 8, type 2
1006
P55286
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDH9
Cadherin-9
1007
Q9ULB4
IP/WB
Shimoyama Y , et al. 2000
CDK2
cyclin-dependent kinase 2
1017
P24941
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Park CS , et al. 2004
CDON
cell adhesion associated, oncogene regulated
50937
Q4KMG0
IP/WB
Kang JS , et al. 2003
CEBPA
CCAAT/enhancer-binding protein zeta
12606
P53569
IP/WB
Kennell JA , et al. 2003
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
GST; ChIP-chip
Thompson BA , et al. 2008
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
ChIP; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Nishiyama M , et al. 2011
CHUK
conserved helix-loop-helix ubiquitous kinase
1147
O15111
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Lamberti C , et al. 2001
COPS3
COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)
8533
Q9UNS2
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Huang X , et al. 2009
COPS5
COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)
10987
Q92905
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Huang X , et al. 2009
COPS8
COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)
10920
Q53QS9
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Huang X , et al. 2009
CREBBP
CREB binding protein
1387
Q92793
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Sustmann C , et al. 2008
CRYAB
Alpha-crystallin B chain
1410
P02511
IP/WB
Ghosh JG , et al. 2007
CSNK1D
casein kinase 1, delta
64462
Q06486
in vitro kinase assay
Amit S , et al. 2002
CTBP1
C-terminal binding protein 1
1487
Q13363
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Hamada F and Bienz M 2004
CTNNA1
catenin (cadherin-associated protein), alpha 1, 102kDa
1495
P35221
MS
Selbach M and Mann M 2006
CTNNA3
catenin (cadherin-associated protein), alpha 3
29119
A8K141
MS; Y2H; High-throughput fluorescence polarization interaction analysis assay
Waaijers S , et al. 2013
CTNNA3
catenin (cadherin-associated protein), alpha 3
29119
A8K141
IP; LC-MS/MS
Huttlin EL , et al. 2015
CTNNBIP1
Beta-catenin-interacting protein 1
56998
Q9NSA3
MS
Selbach M and Mann M 2006
CTNNBIP1
Beta-catenin-interacting protein 1
56998
Q9NSA3
IP; LC-MS/MS
Huttlin EL , et al. 2015
CTNND1
catenin (cadherin-associated protein), delta 1
1500
O60716
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Kucerov D , et al. 2001
CTNND2
catenin (cadherin-associated protein), delta 2
1501
Q9UQB3
IP/WB
Turner TN , et al. 2015
CUL3
cullin 3
8452
B7Z600
MS; LC-MS/MS; High-throughput fluorescence polarization interaction analysis assay
Bennett EJ , et al. 2010
CUL4A
cullin 4A
8451
Q13619
IP/WB
Tripathi R , et al. 2007
DDB1
damage-specific DNA binding protein 1, 127kDa
1642
Q16531
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Kawajiri K , et al. 2009
DDX1
DEAD (Asp-Glu-Ala-Asp) box helicase 1
1653
A3RJH1
MS
Sato S , et al. 2005
DDX5
DEAD (Asp-Glu-Ala-Asp) box helicase 5
1655
P17844
IP/WB
Sato S , et al. 2005
DHX9
DEAH (Asp-Glu-Ala-His) box polypeptide 9
1660
Q08211
MS
Sato S , et al. 2005
DLG5
discs, large homolog 5 (Drosophila)
9231
Q8TDM6
IP/WB; Y2H; GST; High-throughput fluorescence polarization interaction analysis assay
Wakabayashi M , et al. 2003
EGFR
epidermal growth factor receptor
1956
P00533
IP/WB
Schroeder JA , et al. 2002
ELAVL1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
1994
Q15717
Reconstituted complex; RNP IP; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Kim I , et al. 2012
EMD
emerin
2010
P50402
IP/WB
Markiewicz E , et al. 2006
EP300
E1A binding protein p300
2033
Q9Y6B2
IP/WB
Kennell JA , et al. 2003
EP400
E1A binding protein p400
57634
Q96L91
MS
Sierra J , et al. 2006
EPAS1
endothelial PAS domain protein 1
2034
Q99814
MS; Nano-LC/MS/MS; High-throughput fluorescence polarization interaction analysis assay
Steunou AL , et al. 2013
ERBB2
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
2064
P04626
IP/WB
Schroeder JA , et al. 2002
ERBB2IP
erbb2 interacting protein
55914
Q96RT1
Protein-peptide; Peptide microarray; High-throughput fluorescence polarization interaction analysis assay
Boisguerin P , et al. 2004
ESR1
estrogen receptor 1
2099
P03372
IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Kouzmenko AP , et al. 2004
EZH2
enhancer of zeste homolog 2 (Drosophila)
2146
Q15910
IP/WB
Li X , et al. 2009
FAF1
Fas (TNFRSF6) associated factor 1
11124
Q9UNN5
IP/WB
Zhang L , et al. 2011
FAM123B
APC membrane recruitment protein 1
139285
Q5JTC6
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Major MB , et al. 2007
FANCC
Fanconi anemia, complementation group C
2176
Q00597
IP/WB; Ubiquitination assay; High-throughput fluorescence polarization interaction analysis assay
Dao KH , et al. 2012
FANCL
Fanconi anemia, complementation group L
55120
Q9NW38
IP/WB; Ubiquitination assay; High-throughput fluorescence polarization interaction analysis assay
Dao KH , et al. 2012
FBXW11
F-box and WD repeat domain containing 11
23291
Q9UKB1
MS; GST; High-throughput fluorescence polarization interaction analysis assay
Gao D , et al. 2011
FHIT
fragile histidine triad gene
2272
P49789
IP/WB
Weiske J , et al. 2007
FHL2
four and a half LIM domains 2
2274
Q14192
Y2H; IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Wei Y , et al. 2002
FOXO3
forkhead box O3
2309
O43524
IP/WB; Y2H; High-throughput fluorescence polarization interaction analysis assay
Essers MA , et al. 2005
FOXO4
forkhead box O4
4303
P98177
IP/WB
Essers MA , et al. 2005
FUS
fused in sarcoma
2521
P35637
Y2H; IP/WB
Sato S , et al. 2005
GEMIN5
gem (nuclear organelle) associated protein 5
25929
B7ZLC9
MS
Sato S , et al. 2005
GLIS2
Zinc finger protein GLIS2
84662
Q9BZE0
IP/WB; Y2H; M2H; GST; High-throughput fluorescence polarization interaction analysis assay
Kim YS , et al. 2007
GRIP1
glutamate receptor interacting protein 1
23426
Q9Y3R0
Phenotypic enhancement; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Song LN and Gelmann EP 2005
GRIP1
glutamate receptor interacting protein 1
23426
Q9Y3R0
Phenotypic enhancement
Lee YH and Stallcup MR 2006
GSK3B
glycogen synthase kinase 3 beta
2932
P49841
MS; AP-MS; IP/WB; Bimolecular fluorescence complementation assay; High-throughput fluorescence polarization interaction analysis assay
Varjosalo M , et al. 2013
HDAC2
histone deacetylase 2
3066
Q92769
Negative genetic; GST; In vivo acetylation assay; in vitro kinase assay; AMPK kinase assay; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Lin YY , et al. 2012
HDAC4
histone deacetylase 4
9759
P56524
IP/WB
Vietor I , et al. 2005
HDAC6
histone deacetylase 6
10013
Q9UBN7
Biochemical activity
Li Y , et al. 2008
HDAC7
histone deacetylase 7
51564
Q8WUI4
IP/WB
Margariti A , et al. 2010
HERC5
HECT and RLD domain containing E3 ubiquitin protein ligase 5
51191
B4DXV3
IP/WB
Lee JH , et al. 2010
HINT1
histidine triad nucleotide binding protein 1
3094
P49773
IP/WB
Genovese G , et al. 2012
HNRNPA1
heterogeneous nuclear ribonucleoprotein A1
3178
P09651
IP/WB
Sato S , et al. 2005
HNRNPA2B1
heterogeneous nuclear ribonucleoprotein A2/B1
3181
P22626
MS
Sato S , et al. 2005
HNRNPK
heterogeneous nuclear ribonucleoprotein K
3190
P61978
IP/WB
Sato S , et al. 2005
HNRNPM
heterogeneous nuclear ribonucleoprotein M
4670
P52272
MS
Sato S , et al. 2005
HSP90AB1
heat shock protein 90kDa alpha (cytosolic), class B member 1
3326
P08238
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
HSPA1B
heat shock 70kDa protein 1B
3304
A8K5I0
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
HSPA8
heat shock 70kDa protein 8
3312
P11142
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
HTT
Huntingtin
3064
P42858
IP/WB
Godin JD , et al. 2010
IFRD1
Interferon-related developmental regulator 1
15982
P19182
IP/WB
Vietor I , et al. 2005
IKBKB
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
3551
O14920
GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Lamberti C , et al. 2001
IQGAP1
IQ motif containing GTPase activating protein 1
8826
P46940
Reconstituted complex; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Briggs MW , et al. 2001
ISG15
ISG15 ubiquitin-like modifier
9636
P05161
IP/WB
Lee JH , et al. 2010
ITGA3
integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
3675
P26006
IP/WB
Decarlo L , et al. 2015
ITGB1
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
3688
P05556
IP/WB
Decarlo L , et al. 2015
JUP
junction plakoglobin
3728
P14923
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Kucerov D , et al. 2001
KAT2A
K(lysine) acetyltransferase 2A
2648
Q92830
ChIP; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Chen J , et al. 2010
KAT2B
K(lysine) acetyltransferase 2B
8850
Q92831
IP/WB
Ge X , et al. 2008
LATS2
LATS, large tumor suppressor, homolog 2 (Drosophila)
26524
Q9NRM7
MS; LC-MS/MS; High-throughput fluorescence polarization interaction analysis assay
Couzens AL , et al. 2013
LDHB
lactate dehydrogenase B
3945
P07195
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
LEF1
lymphoid enhancer-binding factor 1
51176
Q659G9
IP/WB; Proximity ligation assay
Jamieson C , et al. 2015
LRRFIP1
leucine rich repeat (in FLII) interacting protein 1
9208
E9PGZ2
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Lee YH and Stallcup MR 2006
MAGI2
membrane associated guanylate kinase, WW and PDZ domain containing 2
9863
Q86UL8
GST; IP/WB
Xu J , et al. 2001
MAPK8
mitogen-activated protein kinase 8
5599
P45983
IP/WB; Nano-LC/MS/MS; GST; High-throughput fluorescence polarization interaction analysis assay
Lee MH , et al. 2009
MAPK9
mitogen-activated protein kinase 9
5601
P45984
IP/WB; Nano-LC/MS/MS; GST; High-throughput fluorescence polarization interaction analysis assay
Lee MH , et al. 2009
MEN1
multiple endocrine neoplasia I
4221
O00255
Reconstituted complex
Chen G , et al. 2008
MET
met proto-oncogene (hepatocyte growth factor receptor)
4233
P08581
IP/WB
Davies G , et al. 2001
MICAL-L2
MICAL-like protein 2
79778
Q8IY33
qRT-PCR; Immunohistochemistry; Immunofluorescence; Expression microarray; IP/WB
Zhu LY , et al. 2015
MLL
lysine (K)-specific methyltransferase 2A
4297
Q03164
MS
Sierra J , et al. 2006
MLL2
lysine (K)-specific methyltransferase 2D
8085
O14686
Reconstituted complex; MS; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Sierra J , et al. 2006
MUC1
mucin 1, cell surface associated
4582
P15941
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Li Y , et al. 2003
NDRG1
N-myc downstream regulated 1
10397
Q92597
MS
Tu LC , et al. 2007
NFKB1
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
4790
P19838
ChIP; IP/WB
Kim JH , et al. 2005
NLK
nemo-like kinase
51701
Q9UBE8
IP/WB
Ishitani T , et al. 2003
NONO
non-POU domain containing, octamer-binding
4841
Q15233
MS
Sato S , et al. 2005
NOTCH1
notch 1
4851
P46531
IP/WB; Reconstituted complex; High-throughput fluorescence polarization interaction analysis assay
Jin YH , et al. 2008
NR4A1
Nuclear receptor subfamily 4 group A member 1
3164
P22736
IP/WB; Ubiquitination assay; High-throughput fluorescence polarization interaction analysis assay
Sun Z , et al. 2011
NR5A1
nuclear receptor subfamily 5, group A, member 1
26423
P33242
IP/WB
Kennell JA , et al. 2003
NUP153
nucleoporin 153kDa
9972
P49790
MS; IP/WB; FRAP; High-throughput fluorescence polarization interaction analysis assay
Sharma M , et al. 2011
NUP62
nucleoporin 62kDa
23636
P37198
IP/WB; MS; FRAP; High-throughput fluorescence polarization interaction analysis assay
Sharma M , et al. 2011
NUP98
nucleoporin 98kDa
4928
P52948
MS; IP/WB; FRAP; High-throughput fluorescence polarization interaction analysis assay
Sharma M , et al. 2011
PARP1
poly (ADP-ribose) polymerase 1
142
P09874
MS
Sato S , et al. 2005
PCDH9
protocadherin 9
5101
Q9HC56
ChIP
Pedrosa E , et al. 2010
PHB2
prohibitin 2
11331
Q99623
MS; LC/ESI/MS/MS; Y2H; High-throughput fluorescence polarization interaction analysis assay
Ewing RM , et al. 2007
PHF17
PHD finger protein 17
79960
Q6IE81
IP/WB; Y2H; GST; High-throughput fluorescence polarization interaction analysis assay
Chitalia VC , et al. 2008
PIN1
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
5300
Q13526
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Ryo A , et al. 2001
PITX2
paired-like homeodomain 2
5308
Q99697
IP/WB; ChIP
Kioussi C , et al. 2002
PLK1
polo-like kinase 1
5347
P53350
MS; GST; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Lin DC , et al. 2011
PML
promyelocytic leukemia
5371
P29590
IP/WB; MS; High-throughput fluorescence polarization interaction analysis assay
Satow R , et al. 2011
PROP1
Homeobox protein prophet of Pit-1
5626
O75360
IP/WB; ChIP; GST; High-throughput fluorescence polarization interaction analysis assay
Olson LE , et al. 2006
PRPF6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
24148
O94906
MS
Sato S , et al. 2005
PSEN1
presenilin 1
5663
P49768
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Prager K , et al. 2007
PTEN
phosphatase and tensin homolog
5728
F6KD01
IP/WB
Vogelmann R , et al. 2005
PTGS2
Prostaglandin G/H synthase 2
5743
P35354
Protein-RNA; RNP IP; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Kim I , et al. 2012
PTPN1
protein tyrosine phosphatase, non-receptor type 1
5770
P18031
Reconstituted complex; IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Xu G , et al. 2002
PTPN14
protein tyrosine phosphatase, non-receptor type 14
5784
A8K6H6
MS; ChIP; High-throughput fluorescence polarization interaction analysis assay
Wadham C , et al. 2003
PTPRJ
protein tyrosine phosphatase, receptor type, J
5795
Q12913
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Holsinger LJ , et al. 2002
PTPRU
protein tyrosine phosphatase, receptor type, U
10076
Q92729
IP/WB
Yan HX , et al. 2006
RAC1
ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
5879
P63000
IP/WB; Proximity ligation assay
Jamieson C , et al. 2015
RANBP2
RAN binding protein 2
5903
P49792
IP/WB; MS; FRAP; High-throughput fluorescence polarization interaction analysis assay
Sharma M , et al. 2011
RB1CC1
RB1-inducible coiled-coil 1
9821
Q8TDY2
IP/WB; Y2H; High-throughput fluorescence polarization interaction analysis assay
Choi JD , et al. 2012
RBBP5
retinoblastoma binding protein 5
5929
Q15291
IP/WB; ChIP; GST; High-throughput fluorescence polarization interaction analysis assay
Chen J , et al. 2010
RBFOX1
RNA binding protein, fox-1 homolog (C. elegans) 1
54715
Q9NWB1
qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RBMX
RNA binding motif protein, X-linked
27316
P38159
MS
Sato S , et al. 2005
RPLP2
ribosomal protein, large, P2
6181
P05387
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
RPSA
ribosomal protein SA
3921
P08865
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
RUVBL1
RuvB-like 1 (E. coli)
8607
Q9Y265
MS
Sierra J , et al. 2006
RUVBL2
RuvB-like 2 (E. coli)
10856
Q9Y230
High-throughput fluorescence polarization interaction analysis assay; ChIP; GST; IP/WB; Y2H
Bauer A , et al. 2000
RXRA
retinoid X receptor, alpha
6256
F1D8Q5
IP/WB
Xiao JH , et al. 2003
RYK
receptor-like tyrosine kinase
6259
P34925
MS; AP-MS/MS; High-throughput fluorescence polarization interaction analysis assay
Berndt JD , et al. 2011
SATB1
SATB homeobox 1
6304
Q01826
IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Notani D , et al. 2010
SERBP1
SERPINE1 mRNA binding protein 1
26135
Q8NC51
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
SIAH1
seven in absentia homolog 1 (Drosophila)
6477
Q8IUQ4
Biochemical activity; in vitro ubiquitination assay; High-throughput fluorescence polarization interaction analysis assay
Dimitrova YN , et al. 2010
SIRT1
sirtuin 1
23411
A8K128
IP/WB
Holloway KR , et al. 2010
SKP1
S-phase kinase-associated protein 1
6500
P63208
IP/WB
Wang D , et al. 2011
SLAMF7
SLAM family member 7
57823
Q9NQ25-3
IP; LC-MS/MS
Huttlin EL , et al. 2015
SLC9A3R1
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
9368
O14745
IP/WB
Shibata T , et al. 2003
SMAD2
SMAD family member 2
4087
Q15796
IP/WB
Decarlo L , et al. 2015
SMAD3
SMAD family member 3
4088
P84022
IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Zhou B , et al. 2012
SMAD3
SMAD family member 3
4088
P84022
IP/WB
Decarlo L , et al. 2015
SMAD4
SMAD family member 4
4089
Q13485
IP/WB
Tian YC and Phillips AO 2002
SMAD7
SMAD family member 7
4092
K7EQ10
IP/WB
Tang Y , et al. 2008
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
6597
A7E2E1
Y2H; IP/WB
Barker N , et al. 2001
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
8467
O60264
MS
Sierra J , et al. 2006
SNRPD1
small nuclear ribonucleoprotein D1 polypeptide 16kDa
6632
P62314
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
SOX2
Transcription factor SOX-2
6657
P48431
MS; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Cox JL , et al. 2013
SOX6
SRY (sex determining region Y)-box 6
55553
P35712
IP/WB
Iguchi H , et al. 2007
STRN3
striatin, calmodulin binding protein 3
29966
Q13033
MS; LC-MS/MS; High-throughput fluorescence polarization interaction analysis assay
Couzens AL , et al. 2013
SUV39H1
suppressor of variegation 3-9 homolog 1 (Drosophila)
6839
O43463
IP/WB; MS; High-throughput fluorescence polarization interaction analysis assay
Takahashi A , et al. 2011
TADA2A
transcriptional adaptor 2A
6871
O75478
IP/WB
Yang M , et al. 2007
TADA3
transcriptional adaptor 3
10474
O75528
IP/WB
Yang M , et al. 2007
TAX1BP3
Tax1-binding protein 3
30851
Q9DBG9
X-ray crystallography
Zhang J , et al. 2008
TBL1X
transducin (beta)-like 1X-linked
6907
O60907
ChIP; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Li J and Wang CY 2008
TBL1XR1
transducin (beta)-like 1 X-linked receptor 1
79718
Q9BZK7
IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Li J and Wang CY 2008
TCF3
transcription factor 3
6929
P15923
IP/WB
Sato S , et al. 2005
TCF4
transcription factor 4
6925
B3KVA4
X-ray crystallography
Graham TA , et al. 2001
TCF7L2
transcription factor 7-like 2 (T-cell specific, HMG-box)
6934
Q9NQB0
IP/WB; in vitro binding assay
Tzeng SL , et al. 2006
TCF7L2
transcription factor 7-like 2 (T-cell specific, HMG-box)
6934
Q9NQB0
GST; IP/WB; ChIP; High-throughput fluorescence polarization interaction analysis assay
Del Valle-Prez B , et al. 2011
TFAP2A
transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
7020
P05549
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Li Q and Dashwood RH 2004
TGFBR1
transforming growth factor, beta receptor 1
7046
P36897
IP/WB
Decarlo L , et al. 2015
TGFBR2
transforming growth factor, beta receptor II (70/80kDa)
7048
P37173
IP/WB
Tian YC and Phillips AO 2002
TIP60
Histone acetyltransferase KAT5
10524
Q92993
ChIP; IP/WB
Kim JH , et al. 2005
TOB1
transducer of ERBB2, 1
10140
P50616
Y2H; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Xiong B , et al. 2006
TOP2A
topoisomerase (DNA) II alpha 170kDa
7153
P11388
IP/WB
Sato S , et al. 2005
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
TRRAP
transformation/transcription domain-associated protein
8295
Q9Y4A5
IP/WB; GST; High-throughput fluorescence polarization interaction analysis assay
Sustmann C , et al. 2008
TSC1
tuberous sclerosis 1
7248
Q92574
Y2H
Sakai Y , et al. 2011
TUBA1A
tubulin, alpha 1A
7846
Q71U36
MS; IP/WB; MS/MS; High-throughput fluorescence polarization interaction analysis assay
Tian Q , et al. 2004
UBC
ubiquitin C
7316
P63279
IP/WB
Chen CH , et al. 2012
UBE2B
ubiquitin-conjugating enzyme E2B
7320
P63146
IP/WB; Ubiquitination assay; High-throughput fluorescence polarization interaction analysis assay
Gerard B , et al. 2012
UBE2D1
ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast)
7321
P51668
Reconstituted complex; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Saha A and Deshaies RJ 2008
UHRF2
ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
115426
Q96PU4
Far Western Blot; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Mori T , et al. 2011
VCL
vinculin
7414
B3KXA2
IP/WB
Hazan RB , et al. 1998
WHSC1
Wolf-Hirschhorn syndrome candidate 1
7468
O96028
ChIP; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Toyokawa G , et al. 2011
YWHAZ
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
7534
P63104
IP/WB
Chen CH , et al. 2012
ZBTB33
zinc finger and BTB domain containing 33
10009
Q86T24
Reconstituted complex; GST; IP/WB; High-throughput fluorescence polarization interaction analysis assay
Del Valle-Prez B , et al. 2011
ZFYVE9
zinc finger, FYVE domain containing 9
9372
O95405
Y2H
Colland F , et al. 2004
ACP1
Low molecular weight phosphotyrosine protein phosphatase
11431
Q9D358
GST; IP/WB
Taddei ML , et al. 2002
Akt1
thymoma viral proto-oncogene 1
11651
P31750
qRT-PCR; IP/WB; Luciferase reporter assay; Immunofluorescence
Luo W , et al. 2015
Bcl9l
B-cell CLL/lymphoma 9-like
80288
Q67FY2
GST; Y2H; IP/WB
Adachi S , et al. 2004
CDH8
Cadherin-8
O54800
IP/WB
Kido M , et al. 1998
CTNND2
catenin (cadherin associated protein), delta 2
18163
O35927
IP/WB
Bareiss S , et al. 2010
FER
fer (fps/fes related) tyrosine kinase
2241
P16591
GST; IP/WB; in vitro kinase assay
Piedra J , et al. 2003
FMR1
fragile X mental retardation 1
14265
P35922
HITS-CLIP
Darnell JC , et al. 2011
FYN
FYN oncogene related to SRC, FGR, YES
2534
P06241
GST; IP/WB; in vitro kinase assay
Piedra J , et al. 2003
GRIK2
glutamate receptor, ionotropic, kainate 2
54257
P42260
IP/WB; GST
Coussen F , et al. 2002
HDAC1
Histone deacetylase 1
433759
O09106
ChIP; IP/WB
Iioka H , et al. 2009
LEF1
Lymphoid enhancer-binding factor 1
16842
P27782
IP/WB
Feigin ME and Malbon CC 2008
MET
met proto-oncogene
17295
P16056
IP/WB
Monga SP , et al. 2002
MET
met proto-oncogene
17295
P16056
IP; LC-MS/MS
Xie Z , et al. 2016
Pax6
paired box gene 6
18508
P63015
Luciferase reporter assay
Hsu LC , et al. 2015
SMAD2
Mothers against decapentaplegic homolog 2
17126
Q62432
ChIP; IP/WB
Dahle , et al. 2010
TCF7L2
Trinucleotide repeat-containing gene 6B protein
213988
Q8BKI2
IP/WB
Zhao C , et al. 2016
FAT1
FAT tumor suppressor homolog 1 (Drosophila)
83720
Q9WU10
IP/WB
Hou R , et al. 2006
CALCOCO1
calcium binding and coiled-coil domain 2
419993
E1BRX6
IP/WB
Yang CK , et al. 2006
CARM1
coactivator-associated arginine methyltransferase 1
59035
Q9WVG6
IP/WB; GST
Koh SS , et al. 2002
CTNND2
catenin (cadherin-associated protein), delta 2
1501
Q9UQB3
IP/WB; Co-localization
Lu Q , et al. 1999