Summary Statistics:
ASD Reports: 11
Recent Reports: 2
Annotated variants: 62
Associated CNVs: 1
Evidence score: 2
Gene Score:
Relevance to Autism
Heterozygous variants in the CSNK2B gene are responsible for Poirier-Bienvenu neurodevelopmental syndrome, a neurologic disorder characterized in most cases by early-onset seizures and variably impaired intellectual development (ID); autism spectrum disorder or autistic features have been observed in a subset of affected individuals (Poirier et al., 2017; Sakaguchi et al., 2017; Nakashima et al., 2019; Li et al., 2019; Ernst et al., 2021). Two de novo splice-site variants in the CSNK2B gene were reported in ASD probands in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified CSNK2B as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).
Molecular Function
This gene encodes the beta subunit of casein kinase II, a ubiquitous protein kinase which regulates metabolic pathways, signal transduction, transcription, translation, and replication. The enzyme is composed of three subunits, alpha, alpha prime and beta, which form a tetrameric holoenzyme. The alpha and alpha prime subunits are catalytic, while the beta subunit serves regulatory functions. The enzyme localizes to the endoplasmic reticulum and the Golgi apparatus.
References
Primary
CSNK2B splice site mutations in patients cause intellectual disability with or without myoclonic epilepsy
DD, ID
Autistic features, epilepsy/seizures
Support
Identification of de novo CSNK2A1 and CSNK2B variants in cases of global developmental delay with seizures
DD, ID, epilepsy/seizures
Support
Splicing Interruption by Intron Variants in CSNK2B Causes Poirier-Bienvenu Neurodevelopmental Syndrome: A Focus on Genotype-Phenotype Correlations
ID, epilepsy/seizures
DD, autistic features
Support
Truncating mutation in CSNK2B and myoclonic epilepsy
DD, ID, epilepsy/seizures
Support
De novo variants of CSNK2B cause a new intellectual disability-craniodigital syndrome by disrupting the canonical Wnt signaling pathway
DD, ID
Epilepsy/seizures
Support
De Novo CSNK2B Mutations in Five Cases of Poirier-Bienvenu Neurodevelopmental Syndrome
Poirier-Bienvenu neurodevelopmental syndrome, DD,
ID, learning disability
Support
Two different presentations of de novo variants of CSNK2B: two case reports
Poirier-Bienvenu neurodevelopmental syndrome, DD,
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
DD, epilepsy/seizures
Support
Germline de novo variants in CSNK2B in Chinese patients with epilepsy
Epilepsy/seizures
DD, ID
Recent Recommendation
CSNK2B: A broad spectrum of neurodevelopmental disability and epilepsy severity
DD, ID, epilepsy/seizures
ASD or autistic features
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
GEN1254R001
splice_site_variant
c.367+2T>C
De novo
Simplex
GEN1254R002
splice_site_variant
c.175+2T>G
De novo
Simplex
GEN1254R003
frameshift_variant
c.108dup
p.Thr37TyrfsTer5
De novo
Simplex
GEN1254R004
frameshift_variant
c.533_534insGT
p.Pro179TyrfsTer49
De novo
Simplex
GEN1254R005
missense_variant
c.494A>G
p.His165Arg
De novo
Simplex
GEN1254R006
missense_variant
c.560T>G
p.Leu187Arg
De novo
Simplex
GEN1254R007
frameshift_variant
c.612dup
p.Lys205GlnfsTer38
De novo
Simplex
GEN1254R008a
missense_variant
c.256C>T
p.Arg86Cys
De novo
Simplex
GEN1254R008b
stop_gained
c.13G>T
p.Glu5Ter
De novo
Simplex
GEN1254R009
missense_variant
c.409T>G
p.Cys137Gly
De novo
Simplex
GEN1254R010
frameshift_variant
c.265del
p.Thr90ProfsTer41
De novo
Simplex
GEN1254R011
missense_variant
c.410G>T
p.Cys137Phe
De novo
Simplex
GEN1254R012
missense_variant
c.332G>C
p.Arg111Pro
De novo
Simplex
GEN1254R013
missense_variant
c.332G>C
p.Arg111Pro
De novo
Simplex
GEN1254R014
splice_site_variant
c.368-2A>G
De novo
Simplex
GEN1254R015
stop_gained
c.303C>A
p.Tyr101Ter
De novo
Multiplex (monozygotic twins)
GEN1254R016
stop_gained
c.58G>T
p.Glu20Ter
Unknown
GEN1254R017
frameshift_variant
c.27del
p.Trp9Ter
De novo
GEN1254R018
splice_site_variant
c.73-2A>G
De novo
GEN1254R019
stop_gained
c.124C>T
p.Gln42Ter
De novo
GEN1254R020
initiator_codon_variant
c.1A>G
p.Met1?
De novo
GEN1254R021
missense_variant
c.94G>A
p.Asp32Asn
De novo
GEN1254R022
frameshift_variant
c.542del
p.Asn181ThrfsTer46
De novo
GEN1254R023
missense_variant
c.101T>C
p.Phe34Ser
De novo
GEN1254R024
inframe_insertion
c.78_83dup
p.Glu27_Asp28dup
De novo
GEN1254R025
missense_variant
c.105T>A
p.Asn35Lys
De novo
GEN1254R026
missense_variant
c.409T>C
p.Cys137Arg
De novo
GEN1254R027
missense_variant
c.94G>A
p.Asp32Asn
De novo
GEN1254R028
stop_gained
c.139C>T
p.Arg47Ter
De novo
GEN1254R029
splice_site_variant
c.558-2A>G
Unknown
GEN1254R030
missense_variant
c.229G>A
p.Glu77Lys
De novo
GEN1254R031
missense_variant
c.291G>A
p.Met97Ile
De novo
GEN1254R032
frameshift_variant
c.394_404del
p.Met132LeufsTer110
Unknown
GEN1254R033
initiator_codon_variant
c.2T>A
p.Met1?
De novo
GEN1254R034
stop_gained
c.181G>T
p.Glu61Ter
De novo
GEN1254R035
missense_variant
c.256C>T
p.Arg86Cys
De novo
GEN1254R036
missense_variant
c.316T>G
p.Phe106Val
De novo
GEN1254R037
splice_site_variant
c.548+1G>A
Unknown
GEN1254R038
missense_variant
c.94G>A
p.Asp32Asn
De novo
GEN1254R039
frameshift_variant
c.170del
p.Glu57GlyfsTer15
De novo
GEN1254R040
missense_variant
c.494A>G
p.His165Arg
De novo
Simplex
GEN1254R041
missense_variant
c.94G>T
p.Asp32Tyr
De novo
GEN1254R042
initiator_codon_variant
c.1A>G
p.Met1?
De novo
Simplex
GEN1254R043
frameshift_variant
c.102del
p.Phe34LeufsTer17
De novo
Simplex
GEN1254R044
missense_variant
c.332G>C
p.Arg111Pro
De novo
Simplex
GEN1254R045
missense_variant
c.332G>C
p.Arg111Pro
De novo
Simplex
GEN1254R046
frameshift_variant
c.158_159insA
p.Asp55GlyfsTer5
De novo
Simplex
GEN1254R047
missense_variant
c.94G>C
p.Asp32His
De novo
GEN1254R048
missense_variant
c.94G>A
p.Asp32Asn
De novo
GEN1254R049
missense_variant
c.94G>A
p.Asp32Asn
Unknown
GEN1254R050
stop_gained
c.374C>G
p.Ser125Ter
De novo
GEN1254R051
splice_site_variant
c.367+5del
Unknown
GEN1254R052
splice_site_variant
c.367+5G>A
De novo
GEN1254R053
splice_region_variant
c.367+6T>C
De novo
GEN1254R054
stop_gained
c.58G>T
p.Glu20Ter
De novo
GEN1254R055
missense_variant
c.325T>C
p.Cys109Arg
De novo
GEN1254R056
stop_gained
c.142C>T
p.Gln48Ter
De novo
GEN1254R057
frameshift_variant
c.455_458del
p.Asp152AlafsTer71
De novo
GEN1254R058
missense_variant
c.497T>G
p.Met166Arg
De novo
GEN1254R059
splice_site_variant
c.292-1G>A
De novo
GEN1254R060
splice_site_variant
c.176-2A>G
De novo
Simplex
GEN1254R061
splice_site_variant
c.292-2A>G
De novo
Multiplex
No Common Variants Available
No Animal Model Data Available
No Interactions Available