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Relevance to Autism

Heterozygous variants in the CSNK2B gene are responsible for Poirier-Bienvenu neurodevelopmental syndrome, a neurologic disorder characterized in most cases by early-onset seizures and variably impaired intellectual development (ID); autism spectrum disorder or autistic features have been observed in a subset of affected individuals (Poirier et al., 2017; Sakaguchi et al., 2017; Nakashima et al., 2019; Li et al., 2019; Ernst et al., 2021). Two de novo splice-site variants in the CSNK2B gene were reported in ASD probands in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified CSNK2B as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).

Molecular Function

This gene encodes the beta subunit of casein kinase II, a ubiquitous protein kinase which regulates metabolic pathways, signal transduction, transcription, translation, and replication. The enzyme is composed of three subunits, alpha, alpha prime and beta, which form a tetrameric holoenzyme. The alpha and alpha prime subunits are catalytic, while the beta subunit serves regulatory functions. The enzyme localizes to the endoplasmic reticulum and the Golgi apparatus.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
CSNK2B splice site mutations in patients cause intellectual disability with or without myoclonic epilepsy
DD, ID
Autistic features, epilepsy/seizures
Support
Identification of de novo CSNK2A1 and CSNK2B variants in cases of global developmental delay with seizures
DD, ID, epilepsy/seizures
Support
Splicing Interruption by Intron Variants in CSNK2B Causes Poirier-Bienvenu Neurodevelopmental Syndrome: A Focus on Genotype-Phenotype Correlations
ID, epilepsy/seizures
DD, autistic features
Support
Truncating mutation in CSNK2B and myoclonic epilepsy
DD, ID, epilepsy/seizures
Support
De novo variants of CSNK2B cause a new intellectual disability-craniodigital syndrome by disrupting the canonical Wnt signaling pathway
DD, ID
Epilepsy/seizures
Support
De Novo CSNK2B Mutations in Five Cases of Poirier-Bienvenu Neurodevelopmental Syndrome
Poirier-Bienvenu neurodevelopmental syndrome, DD,
ID, learning disability
Support
Two different presentations of de novo variants of CSNK2B: two case reports
Poirier-Bienvenu neurodevelopmental syndrome, DD,
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
DD, epilepsy/seizures
Support
Germline de novo variants in CSNK2B in Chinese patients with epilepsy
Epilepsy/seizures
DD, ID
Recent Recommendation
CSNK2B: A broad spectrum of neurodevelopmental disability and epilepsy severity
DD, ID, epilepsy/seizures
ASD or autistic features
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1254R001 
 splice_site_variant 
 c.367+2T>C 
  
 De novo 
  
 Simplex 
 GEN1254R002 
 splice_site_variant 
 c.175+2T>G 
  
 De novo 
  
 Simplex 
 GEN1254R003 
 frameshift_variant 
 c.108dup 
 p.Thr37TyrfsTer5 
 De novo 
  
 Simplex 
 GEN1254R004 
 frameshift_variant 
 c.533_534insGT 
 p.Pro179TyrfsTer49 
 De novo 
  
 Simplex 
 GEN1254R005 
 missense_variant 
 c.494A>G 
 p.His165Arg 
 De novo 
  
 Simplex 
 GEN1254R006 
 missense_variant 
 c.560T>G 
 p.Leu187Arg 
 De novo 
  
 Simplex 
 GEN1254R007 
 frameshift_variant 
 c.612dup 
 p.Lys205GlnfsTer38 
 De novo 
  
 Simplex 
 GEN1254R008a 
 missense_variant 
 c.256C>T 
 p.Arg86Cys 
 De novo 
  
 Simplex 
 GEN1254R008b 
 stop_gained 
 c.13G>T 
 p.Glu5Ter 
 De novo 
  
 Simplex 
 GEN1254R009 
 missense_variant 
 c.409T>G 
 p.Cys137Gly 
 De novo 
  
 Simplex 
 GEN1254R010 
 frameshift_variant 
 c.265del 
 p.Thr90ProfsTer41 
 De novo 
  
 Simplex 
 GEN1254R011 
 missense_variant 
 c.410G>T 
 p.Cys137Phe 
 De novo 
  
 Simplex 
 GEN1254R012 
 missense_variant 
 c.332G>C 
 p.Arg111Pro 
 De novo 
  
 Simplex 
 GEN1254R013 
 missense_variant 
 c.332G>C 
 p.Arg111Pro 
 De novo 
  
 Simplex 
 GEN1254R014 
 splice_site_variant 
 c.368-2A>G 
  
 De novo 
  
 Simplex 
 GEN1254R015 
 stop_gained 
 c.303C>A 
 p.Tyr101Ter 
 De novo 
  
 Multiplex (monozygotic twins) 
 GEN1254R016 
 stop_gained 
 c.58G>T 
 p.Glu20Ter 
 Unknown 
  
  
 GEN1254R017 
 frameshift_variant 
 c.27del 
 p.Trp9Ter 
 De novo 
  
  
 GEN1254R018 
 splice_site_variant 
 c.73-2A>G 
  
 De novo 
  
  
 GEN1254R019 
 stop_gained 
 c.124C>T 
 p.Gln42Ter 
 De novo 
  
  
 GEN1254R020 
 initiator_codon_variant 
 c.1A>G 
 p.Met1? 
 De novo 
  
  
 GEN1254R021 
 missense_variant 
 c.94G>A 
 p.Asp32Asn 
 De novo 
  
  
 GEN1254R022 
 frameshift_variant 
 c.542del 
 p.Asn181ThrfsTer46 
 De novo 
  
  
 GEN1254R023 
 missense_variant 
 c.101T>C 
 p.Phe34Ser 
 De novo 
  
  
 GEN1254R024 
 inframe_insertion 
 c.78_83dup 
 p.Glu27_Asp28dup 
 De novo 
  
  
 GEN1254R025 
 missense_variant 
 c.105T>A 
 p.Asn35Lys 
 De novo 
  
  
 GEN1254R026 
 missense_variant 
 c.409T>C 
 p.Cys137Arg 
 De novo 
  
  
 GEN1254R027 
 missense_variant 
 c.94G>A 
 p.Asp32Asn 
 De novo 
  
  
 GEN1254R028 
 stop_gained 
 c.139C>T 
 p.Arg47Ter 
 De novo 
  
  
 GEN1254R029 
 splice_site_variant 
 c.558-2A>G 
  
 Unknown 
  
  
 GEN1254R030 
 missense_variant 
 c.229G>A 
 p.Glu77Lys 
 De novo 
  
  
 GEN1254R031 
 missense_variant 
 c.291G>A 
 p.Met97Ile 
 De novo 
  
  
 GEN1254R032 
 frameshift_variant 
 c.394_404del 
 p.Met132LeufsTer110 
 Unknown 
  
  
 GEN1254R033 
 initiator_codon_variant 
 c.2T>A 
 p.Met1? 
 De novo 
  
  
 GEN1254R034 
 stop_gained 
 c.181G>T 
 p.Glu61Ter 
 De novo 
  
  
 GEN1254R035 
 missense_variant 
 c.256C>T 
 p.Arg86Cys 
 De novo 
  
  
 GEN1254R036 
 missense_variant 
 c.316T>G 
 p.Phe106Val 
 De novo 
  
  
 GEN1254R037 
 splice_site_variant 
 c.548+1G>A 
  
 Unknown 
  
  
 GEN1254R038 
 missense_variant 
 c.94G>A 
 p.Asp32Asn 
 De novo 
  
  
 GEN1254R039 
 frameshift_variant 
 c.170del 
 p.Glu57GlyfsTer15 
 De novo 
  
  
 GEN1254R040 
 missense_variant 
 c.494A>G 
 p.His165Arg 
 De novo 
  
 Simplex 
 GEN1254R041 
 missense_variant 
 c.94G>T 
 p.Asp32Tyr 
 De novo 
  
  
 GEN1254R042 
 initiator_codon_variant 
 c.1A>G 
 p.Met1? 
 De novo 
  
 Simplex 
 GEN1254R043 
 frameshift_variant 
 c.102del 
 p.Phe34LeufsTer17 
 De novo 
  
 Simplex 
 GEN1254R044 
 missense_variant 
 c.332G>C 
 p.Arg111Pro 
 De novo 
  
 Simplex 
 GEN1254R045 
 missense_variant 
 c.332G>C 
 p.Arg111Pro 
 De novo 
  
 Simplex 
 GEN1254R046 
 frameshift_variant 
 c.158_159insA 
 p.Asp55GlyfsTer5 
 De novo 
  
 Simplex 
 GEN1254R047 
 missense_variant 
 c.94G>C 
 p.Asp32His 
 De novo 
  
  
 GEN1254R048 
 missense_variant 
 c.94G>A 
 p.Asp32Asn 
 De novo 
  
  
 GEN1254R049 
 missense_variant 
 c.94G>A 
 p.Asp32Asn 
 Unknown 
  
  
 GEN1254R050 
 stop_gained 
 c.374C>G 
 p.Ser125Ter 
 De novo 
  
  
 GEN1254R051 
 splice_site_variant 
 c.367+5del 
  
 Unknown 
  
  
 GEN1254R052 
 splice_site_variant 
 c.367+5G>A 
  
 De novo 
  
  
 GEN1254R053 
 splice_region_variant 
 c.367+6T>C 
  
 De novo 
  
  
 GEN1254R054 
 stop_gained 
 c.58G>T 
 p.Glu20Ter 
 De novo 
  
  
 GEN1254R055 
 missense_variant 
 c.325T>C 
 p.Cys109Arg 
 De novo 
  
  
 GEN1254R056 
 stop_gained 
 c.142C>T 
 p.Gln48Ter 
 De novo 
  
  
 GEN1254R057 
 frameshift_variant 
 c.455_458del 
 p.Asp152AlafsTer71 
 De novo 
  
  
 GEN1254R058 
 missense_variant 
 c.497T>G 
 p.Met166Arg 
 De novo 
  
  
 GEN1254R059 
 splice_site_variant 
 c.292-1G>A 
  
 De novo 
  
  
 GEN1254R060 
 splice_site_variant 
 c.176-2A>G 
  
 De novo 
  
 Simplex 
 GEN1254R061 
 splice_site_variant 
 c.292-2A>G 
  
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion-Duplication
 2
 

No Animal Model Data Available

 

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