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Relevance to Autism

CSMD3 was initially proposed as an autism candidate gene based on the identification of de novo balanced translocations with breakpoints near this gene in two patients diagnosed with autistic disorder (Floris et al., 2008). Whole-genome sequencing of 32 Chinese ASD trios in Wu et al., 2018 identified a statistically significant enrichment in transmitted damaging missense variants in CSMD3 vs. non-transmitted damaging missense variants (6 transmitted vs. 1 non-transmitted, P-value 0.00049). De novo coding variants in this gene, including a damaging missense variant, have been identified in ASD probands (Iossifov et al., 2014; Takata et al., 2018; Satterstrom et al., 2020). Song et al., 2022 identified rare and potentially deleterious missense variants in CSMD3 in Chinese patients with neurodevelopmental disorders (NDDs), including ASD, intellectual disability, schizophrenia, and epileptic encephalopathy; in the same report, disruption of Csmd3 in mice resulted in NDD-related behaviors, abnormal neuronal developmental and cortical lamination, and abnormal dendritic arborization and spine organization in cortical neurons.

Molecular Function

Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane. Overexpression of CSMD3 in cultured hippocampal neurons has been shown to induce dendritic branching (Mizukami et al., 2012).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Two patients with balanced translocations and autistic disorder: CSMD3 as a candidate gene for autism found in their common 8q23 breakpoint area
ASD, DD, ID
Epilepsy/seizures
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
CUB and Sushi multiple domains 3 regulates dendrite development
Support
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Genomic landscapes of Chinese sporadic autism spectrum disorders revealed by whole-genome sequencing.
ASD
Recent Recommendation
2022 May
ASD
ID, SCZ, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1309R001 
 translocation 
  
  
 De novo 
  
  
 GEN1309R002 
 translocation 
  
  
 De novo 
  
  
 GEN1309R003 
 synonymous_variant 
 c.1932C>T 
 p.Asp644%3D 
 De novo 
  
 Simplex 
 GEN1309R004 
 missense_variant 
 c.1475C>A 
 p.Pro492Gln 
 Unknown 
  
  
 GEN1309R005 
 missense_variant 
 c.8468T>C 
 p.Ile2823Thr 
 Unknown 
  
  
 GEN1309R006 
 missense_variant 
 c.6355A>T 
 p.Ser2119Cys 
 Unknown 
  
  
 GEN1309R007 
 missense_variant 
 c.3551A>T 
 p.Asp1184Val 
 De novo 
  
 Simplex 
 GEN1309R008 
 missense_variant 
 c.2666A>G 
 p.Asn889Ser 
 Familial 
  
 Simplex 
 GEN1309R009 
 missense_variant 
 c.6500A>C 
 p.Asn2167Thr 
 Familial 
  
 Simplex 
 GEN1309R010 
 missense_variant 
 c.3104C>T 
 p.Ser1035Leu 
 Familial 
  
 Simplex 
 GEN1309R011 
 missense_variant 
 c.2511G>C 
 p.Gln837His 
 Familial 
  
 Simplex 
 GEN1309R012 
 missense_variant 
 c.4724G>A 
 p.Arg1575Gln 
 Familial 
  
 Simplex 
 GEN1309R013 
 missense_variant 
 c.7466G>A 
 p.Arg2489His 
 Familial 
  
 Simplex 
 GEN1309R014 
 synonymous_variant 
 c.5115C>T 
 p.Gly1705%3D 
 De novo 
  
  
 GEN1309R015 
 synonymous_variant 
 c.7110A>T 
 p.Leu2370%3D 
 De novo 
  
  
 GEN1309R016 
 missense_variant 
 c.7166G>A 
 p.Gly2389Asp 
 De novo 
  
  
 GEN1309R017 
 missense_variant 
 c.8750A>C 
 p.Tyr2917Ser 
 Unknown 
  
  
 GEN1309R018 
 missense_variant 
 c.5996C>G 
 p.Pro1999Arg 
 Familial 
 Maternal 
  
 GEN1309R019 
 missense_variant 
 c.7856G>T 
 p.Gly2619Val 
 Familial 
 Maternal 
  
 GEN1309R020 
 missense_variant 
 c.4898C>T 
 p.Ser1633Leu 
 Familial 
 Paternal 
  
 GEN1309R021 
 missense_variant 
 c.5476G>T 
 p.Asp1826Tyr 
 Familial 
 Paternal 
  
 GEN1309R022 
 missense_variant 
 c.4217A>G 
 p.Tyr1406Cys 
 Unknown 
  
  
 GEN1309R023 
 missense_variant 
 c.4217A>G 
 p.Tyr1406Cys 
 Unknown 
  
  
 GEN1309R024 
 missense_variant 
 c.6949T>C 
 p.Tyr2317His 
 Familial 
 Maternal 
  
 GEN1309R025 
 missense_variant 
 c.6949T>C 
 p.Tyr2317His 
 Familial 
 Maternal 
  
 GEN1309R026 
 missense_variant 
 c.7997A>G 
 p.Tyr2666Cys 
 Familial 
 Maternal 
  
 GEN1309R027 
 missense_variant 
 c.2218C>T 
 p.Arg740Trp 
 Familial 
 Paternal 
  
 GEN1309R028 
 missense_variant 
 c.3853G>A 
 p.Gly1285Arg 
 Familial 
 Paternal 
  
 GEN1309R029 
 synonymous_variant 
 c.10347A>G 
 p.Glu3449%3D 
 De novo 
  
  
 GEN1309R030 
 missense_variant 
 c.8866G>T 
 p.Gly2956Cys 
 De novo 
  
 Simplex 
 GEN1309R031 
 missense_variant 
 c.6448C>T 
 p.His2150Tyr 
 De novo 
  
 Simplex 
 GEN1309R032 
 missense_variant 
 c.5525T>C 
 p.Leu1842Pro 
 De novo 
  
 Simplex 
 GEN1309R033 
 intron_variant 
 c.178+59943_178+59944insGATA 
  
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Duplication
 1
 
8
Deletion
 2
 
8
Deletion
 9
 
8
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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