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Relevance to Autism

A number of de novo variants in the CSMD2 gene, including a de novo loss-of-function variant and four de novo missense variants, have been identified in ASD probands from the Simons Simplex Collection, the SPARK cohort, the MSSNG cohort, a Chinese ASD cohort, and a Pakistani ASD cohort (Iossifov et al., 2014; Zhou et al., 2022; Yuan et al., 2023; Khan et al., 2024). A compound heterozygous mutation in the CSMD2 gene consisting of two inherited missense variants was reported in an ASD proband born to non-consanguineous parents (Tuncay et al., 2022). A de novo missense variant in this gene was also identified in an ADHD proband from a simplex family in Kim et al., 2017.

Molecular Function

The protein encoded by this gene is thought to be involved in the control of complement cascade of the immune system. Variants in this gene have been found to associate with adult ADHD (Lesch et al., 2008) and schizophrenia (Havik et al., 2011).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Biallelic variants identified in 36 Pakistani families and trios with autism spectrum disorder
ASD
Positive Association
The complement control-related genes CSMD1 and CSMD2 associate to schizophrenia
Schizophrenia
Positive Association
Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.
ADHD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
DD
Support
Sequencing of sporadic Attention-Deficit Hyperactivity Disorder (ADHD) identifies novel and potentially pathogenic de novo variants and excludes overlap with genes associated with autism spectrum diso
ADHD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Prospective study to analyze the yield and clinical impact of trio exome sequencing in 137 Indian children with autism spectrum disorder
ASD
DD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1450R001 
 missense_variant 
 c.5984G>A 
 p.Arg1995Gln 
 De novo 
  
 Simplex 
 GEN1450R002 
 upstream_gene_variant 
  
  
 De novo 
  
 Simplex 
 GEN1450R003 
 synonymous_variant 
 c.6435C>T 
 p.Phe2145= 
 De novo 
  
 Simplex 
 GEN1450R004 
 synonymous_variant 
 c.8925C>T 
 p.Ser2975= 
 De novo 
  
  
 GEN1450R005 
 missense_variant 
 c.8713A>G 
 p.Thr2905Ala 
 De novo 
  
 Multiplex 
 GEN1450R006 
 synonymous_variant 
 c.8628C>T 
 p.Phe2876= 
 De novo 
  
 Simplex 
 GEN1450R007 
 missense_variant 
 c.2780C>T 
 p.Ala927Val 
 De novo 
  
  
 GEN1450R008 
 splice_site_variant 
 c.712+1G>T 
  
 De novo 
  
  
 GEN1450R009 
 missense_variant 
 c.7903C>T 
 p.Arg2635Cys 
 De novo 
  
  
 GEN1450R010a 
 missense_variant 
 c.2107G>A 
 p.Val703Met 
 Familial 
 Paternal 
 Simplex 
 GEN1450R010b 
 missense_variant 
 c.9665G>A 
 p.Arg3222His 
 Familial 
 Maternal 
 Simplex 
 GEN1450R011 
 missense_variant 
 c.2671A>G 
 p.Ile891Val 
 De novo 
  
 Simplex 
 GEN1450R012a 
 frameshift_variant 
 c.6318dup 
 p.Tyr2107LeufsTer6 
 Unknown 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1450C001 
 intron_variant 
 rs2281597 
 c.920+23837C>A;c.800+23837C>A 
  
 343 adult German individuals diagnosed with ADHD (156 females, 187 males; mean age 32.9 years) and 304 adult controls (148 females, 156 males). 
 Discovery 
 GEN1450C002 
 intron_variant 
 rs911213 
 c.1034-3332C>A;c.914-3332C>A 
  
 466 SCZ cases and 1273 controls from Germany, 506 SCZ cases and 896 controls from Denmark, and 161 SCZ cases and 275 controls from Norway 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion
 7
 
1
Duplication
 1
 
1
Duplication
 2
 

No Animal Model Data Available

 

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