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Relevance to Autism

A de novo nonsense variant in the CSDE1 gene was identified in an ASD proband from the Simons Simplex Collection (SSC; Iossifov et al., 2014). Guo et al., 2019 initially targeted the coding region of the CSDE1 gene using a modified single-molecule molecular inversion probe approach among 4,045 ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort and identified de novo likely gene-disruptive variants in three simplex families. Analysis of the SSC proband, the three ACGC probands, and thirteen additional individuals with likely gene-disruptive variants in CSDE1 identified a new neurodevelopmental syndrome characterized by ASD (a formal diagnosis was made in 10/15 evaluated individuals), intellectual disability, language and motor delay, seizures, MRI brain abnormalities, seizures, macrocephaly, behavioral problems (including ADHD and anxiety), and eye abnormalities.

Molecular Function

RNA-binding protein. Required for internal initiation of translation of human rhinovirus RNA. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
A de novo CSDE1 variant causing neurodevelopmental delay, intellectual disability, neurologic and psychiatric symptoms in a child of consanguineous parents
DD, ID
Support
Wnt/β-catenin pathway and cell adhesion deregulation in CSDE1-related intellectual disability and autism spectrum disorders
DD, ID, epilepsy/seizures
Stereotypy
Recent Recommendation
Recent Recommendation
Disruptive variants of CSDE1 associate with autism and interfere with neuronal development and synaptic transmission.
ASD, DD, ID
ADHD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1130R001 
 stop_gained 
 c.229C>T 
 p.Arg77Ter 
 De novo 
  
 Simplex 
 GEN1130R002 
 stop_gained 
 c.1174G>T 
 p.Glu392Ter 
 De novo 
  
 Simplex 
 GEN1130R003 
 frameshift_variant 
 c.1396dup 
 p.Val466GlyfsTer23 
 De novo 
  
 Simplex 
 GEN1130R004 
 splice_site_variant 
 c.1603-1G>A 
  
 De novo 
  
 Simplex 
 GEN1130R005 
 frameshift_variant 
 c.905_906del 
 p.Lys302ArgfsTer12 
 De novo 
  
 Unknown 
 GEN1130R006 
 frameshift_variant 
 c.149del 
 p.Phe50SerfsTer14 
 De novo 
  
 Simplex 
 GEN1130R007 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 De novo 
  
 Simplex 
 GEN1130R008 
 stop_gained 
 c.1108C>T 
 p.Arg370Ter 
 De novo 
  
 Simplex 
 GEN1130R009 
 frameshift_variant 
 c.110dup 
 p.Tyr37Ter 
 Familial 
 Paternal 
 Simplex 
 GEN1130R010 
 frameshift_variant 
 c.105del 
 p.Ser36LeufsTer28 
 Familial 
 Paternal 
 Simplex 
 GEN1130R011 
 stop_gained 
 c.1639C>T 
 p.Gln547Ter 
 Familial 
 Paternal 
 Unknown 
 GEN1130R012 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 Familial 
 Maternal 
 Unknown 
 GEN1130R013 
 frameshift_variant 
 c.2368_2371del 
 p.Lys790SerfsTer17 
 Familial 
 Maternal 
 Simplex 
 GEN1130R014 
 splice_site_variant 
 c.1330-1G>A 
  
 Familial 
 Paternal 
 Unknown 
 GEN1130R015 
 splice_site_variant 
 c.1753+2T>C 
  
 Familial 
 Paternal 
 Simplex 
 GEN1130R016 
 frameshift_variant 
 c.1225dup 
 p.Arg409LysfsTer3 
 Familial 
 Maternal 
 Multi-generational 
 GEN1130R017 
 frameshift_variant 
 c.2333del 
 p.Gly778AspfsTer30 
 Unknown 
 Not maternal 
 Multi-generational 
 GEN1130R018 
 frameshift_variant 
 c.1678dup 
 p.Asp560GlyfsTer6 
 Unknown 
 Not maternal 
 Unknown 
 GEN1130R019 
 missense_variant 
 c.2469G>T 
 p.Arg823Ser 
 De novo 
  
 Simplex 
 GEN1130R020 
 missense_variant 
 c.1111C>T 
 p.Arg371Cys 
 De novo 
  
 Simplex 
 GEN1130R021 
 missense_variant 
 c.1567G>C 
 p.Val523Leu 
 De novo 
  
 Multiplex 
 GEN1130R022 
 stop_gained 
 c.362C>A 
 p.Ser121Ter 
 De novo 
  
 Simplex 
 GEN1130R023 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 De novo 
  
 Simplex 
 GEN1130R024 
 stop_gained 
 c.1660C>T 
 p.Arg554Ter 
 De novo 
  
  
 GEN1130R025 
 frameshift_variant 
 c.911_912insCG 
 p.Lys305GlyfsTer5 
 De novo 
  
  
 GEN1130R026 
 missense_variant 
 c.1036G>A 
 p.Gly346Arg 
 De novo 
  
  
 GEN1130R027 
 synonymous_variant 
 c.912C>A 
 p.Ile304%3D 
 De novo 
  
  
 GEN1130R028 
 missense_variant 
 c.2404C>T 
 p.Arg802Cys 
 De novo 
  
  
 GEN1130R029 
 missense_variant 
 c.1570G>A 
 p.Glu524Lys 
 De novo 
  
  
 GEN1130R030 
 missense_variant 
 c.1567G>C 
 p.Val523Leu 
 De novo 
  
  
 GEN1130R031 
 frameshift_variant 
 c.1173dup 
 p.Glu392ArgfsTer7 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 13
 
1
Duplication
 1
 
1
Duplication
 1
 
1
Deletion-Duplication
 23
 

No Animal Model Data Available

 

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