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Relevance to Autism

De novo variants in the CRMP1 gene have been reported to cause a neurodevelopmental disorder characterized by developmental delay, intellectual disability, and behavioral abnormalities; autism spectrum disorder was diagnosed in an individual with a de novo missense variant that was experimentally shown to impair CRMP1B homo-oligomerization and attenuate neurite outgrowth in mouse cortical neurons in Ravindran et al., 2022 and in an individual with a de novo frameshift variant in Liu et al., 2024. Additional de novo variants in the CRMP1 gene, including two de novo missense variants that were not reported in control databases and were predicted to be damaging by CADD, have been reported in ASD probands from the Simons Simplex Collection, the SPARK cohort, the Autism Sequencing Consortium, and a Korean ASD cohort (Satterstrom et al., 2020; Zhou et al., 2022; Kim et al., 2024). Several studies have previously reported that maternal autoantibody reactivity to CRMP1 was associated with elevated severity of ASD (Braunschweig et al., 2013; Ramirez-Celis et al., 2021; Ramirez-Celis et al., 2022).

Molecular Function

This gene encodes a member of a family of cytosolic phosphoproteins expressed exclusively in the nervous system. The encoded protein is thought to be a part of the semaphorin signal transduction pathway implicated in semaphorin-induced growth cone collapse during neural development.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Case report: A de novo variant of CRMP1 in an individual with a neurodevelopmental disorder
ASD, DD, ID
Support
Maternal autoantibody profiles as biomarkers for ASD and ASD with co-occurring intellectual disability
ASD
Support
Risk assessment analysis for maternal autoantibody-related autism (MAR-ASD): a subtype of autism
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Mice lacking collapsin response mediator protein 1 manifest hyperactivity, impaired learning and memory, and impaired prepulse inhibition
Schizophrenia
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Autism-specific maternal autoantibodies recognize critical proteins in developing brain
ASD
Support
Monoallelic CRMP1 gene variants cause neurodevelopmental disorder
DD, ID
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1485R001 
 frameshift_variant 
 c.1755delG 
 p.Lys586ArgfsTer75 
 De novo 
  
 Simplex 
 GEN1485R002 
 missense_variant 
 c.1766C>T 
 p.Pro589Leu 
 De novo 
  
 Simplex 
 GEN1485R003 
 missense_variant 
 c.1280C>T 
 p.Thr427Met 
 De novo 
  
 Simplex 
 GEN1485R004 
 missense_variant 
 c.1052T>C 
 p.Phe351Ser 
 De novo 
  
 Simplex 
 GEN1485R005 
 splice_region_variant 
 c.883-6C>T 
 p.? 
 De novo 
  
  
 GEN1485R006 
 missense_variant 
 c.1786G>A 
 p.Val596Ile 
 De novo 
  
 Simplex 
 GEN1485R007 
 missense_variant 
 c.1571T>G 
 p.Val524Gly 
 De novo 
  
 Simplex 
 GEN1485R008 
 synonymous_variant 
 c.1242G>A 
 p.Ala414= 
 De novo 
  
  
 GEN1485R009 
 missense_variant 
 c.1966T>C 
 p.Ser656Pro 
 De novo 
  
  
 GEN1485R010 
 synonymous_variant 
 c.564G>A 
 p.Thr188= 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Deletion-Duplication
 26
 
4
Deletion
 9
 
4
Deletion
 3
 
4
Duplication
 1
 
4
Duplication
 2
 
4
Deletion-Duplication
 3
 
4
Duplication
 2
 
4
Deletion
 3
 
4
Deletion
 2
 
4
Duplication
 18
 
4
Deletion
 1
 

Model Summary

The homozygous Crmp1 knockout mouse model is viable and shows decreased body weight. The knockout model shows normal grip strength, touch, nociception, gait, anxiety-like behavior, emotional response to fear and defeat, and acoustic startle response. The knockout model shows increased locomotor activity, decreased contextual fear memory (but normal cued fear memory), decreased long-term remote spatial memory (but normal 24-hour spatial memory), decreased prepulse inhibition of acoustic startle and increased methamphetamine-induced dopamine release. Acute treatment with chlorpromazine rescues the prepulse inhibition phenotype.

References

Type
Title
Author, Year
Primary
Mice lacking collapsin response mediator protein 1 manifest hyperactivity, impaired learning and memory, and impaired prepulse inhibition

M_CRMP1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Exon 4 of Crmp1 was replaced with an IRES-LacZ-neo cassette (MGI:3701338).
Allele Type: Knockout
Strain of Origin: (129X1/SvJ x 129S1/Sv)F1-Kitl+
Genetic Background: C57BL/6N
ES Cell Line: R1
Mutant ES Cell Line:
Model Source: Pappachan Kolattukudy (Universite Claude Bernard, Lyon, France)

M_CRMP1_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Increased
Description: Crmp1 knockout shows increase diurnal activity.
 Home cage behavior
 69-75 weeks
General locomotor activity: ambulatory activity1
Increased
Description: Crmp1 knockout shows increase in ambulatory activity.
 Open field test
 21-26 weeks
Neurotransmitter release: catecholamines: dopamine1
Increased
Description: Methamphetamine-induced dopamine release is increased in Crmp1 knockout mice.
Exp Paradigm: In vivo microdialysis, following methamphetamine treatment
 Microdialysis
 unreported
Sensorimotor gating1
Decreased
Description: Crmp1 knockout shows a decrease in paired pulse inhibition.
 Prepulse inhibition
 12 weeks
Size/growth1
Decreased
Description: Crmp1 knockout shows decreased body size.
 Body weight measurement
 21-25 weeks
Anxiety1
Decreased
Description: Crmp1 knockout shows increase time in center of open field.
 Open field test
 21-26 weeks
Depression1
Decreased
Description: Crmp1 knockout shows decreased immobility in forced swim test.
 Forced swim test
 24-28 weeks
Spatial reference memory: long term recall1
Decreased
Description: Crmp1 knockout shows decrease in long term recall of spatial memory.
Exp Paradigm: 12-day probe test
 Barnes maze test
 25-29 weeks
Cued or contextual fear conditioning: memory of context1
Decreased
Description: Crmp1 knockout shows decreased freezing in contextual trial.
 Fear conditioning test
 37-41 weeks
Anxiety1
 No change
 Light-dark exploration test
 21-25 weeks
Anxiety1
 No change
 Elevated plus maze test
 21-26 weeks
Depression1
 No change
 Tail suspension test
 39-43 weeks
Fear response1
 No change
 Fear conditioning test
 37-41 weeks
Cued or contextual fear conditioning: memory of cue1
 No change
 Fear conditioning test
 37-41 weeks
Spatial learning1
 No change
 Barnes maze test
 25-29 weeks
Spatial reference memory1
 No change
 Barnes maze test
 25-29 weeks
Spatial working memory1
 No change
 T-maze test
 32-36 weeks
Gait1
 No change
 Gait
 24-29 weeks
Grip strength1
 No change
 Grip strength test
 21-25 weeks
Motor coordination and balance1
 No change
 Accelerating rotarod test
 22-26 weeks
Rearing behavior1
 No change
 Open field test
 21-26 weeks
Righting response1
 No change
 Righting reflex test
 21-25 weeks
Core body temperature1
 No change
 Body temperature measurement
 21-25 weeks
Stereotypy1
 No change
 Open field test
 21-26 weeks
Pain or nociception: thermal1
 No change
 Hot plate test
 21-26 weeks
Startle response: acoustic stimulus1
 No change
 Acoustic startle reflex test
 12 weeks
Touch1
 No change
 Gentle touch test
 21-25 weeks
Touch1
 No change
 Response to air puff
 21-25 weeks
Social approach1
 No change
 Three-chamber social approach test
 23-27 weeks
Social interaction1
 No change
 Reciprocal social interaction test
 22-26 weeks
 Not Reported:

 

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