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Relevance to Autism

De novo damaging missense variants (defined by CADD score 25) in the CPZ gene were identified in ASD probands from the Simons Simplex Collection and the Autism Sequencing Consortium (De Rubeis et al., 2014; Iossifov et al., 2014), while a third de novo damaging missense variant in this gene was observed in an ASD proband from the SPARK cohort (Feliciano et al., 2019). A meta-analysis of de novo variants in 4773 published ASD trios and 465 SPARK trios using TADA identified CPZ as an ASD candidate gene with a q-value 0.1.

Molecular Function

This gene encodes a member of the metallocarboxypeptidase family. This enzyme displays carboxypeptidase activity towards substrates with basic C-terminal residues. It is most active at neutral pH and is inhibited by active site-directed inhibitors of metallocarboxypeptidases.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1121R001 
 missense_variant 
 c.1564C>T 
 p.Arg522Trp 
 De novo 
  
  
 GEN1121R002 
 missense_variant 
 c.1510C>T 
 p.Arg504Trp 
 De novo 
  
 Simplex 
 GEN1121R003 
 missense_variant 
 c.1727G>A 
 p.Arg576His 
 De novo 
  
  
 GEN1121R004 
 missense_variant 
 c.1790G>A 
 p.Arg597Lys 
 De novo 
  
  
 GEN1121R005 
 missense_variant 
 c.644G>A 
 p.Arg215His 
 De novo 
  
  
 GEN1121R006 
 missense_variant 
 c.1708C>T 
 p.Arg570Trp 
 De novo 
  
  
 GEN1121R007 
 missense_variant 
 c.1460T>A 
 p.Leu487His 
 De novo 
  
 Simplex 
 GEN1121R008 
 synonymous_variant 
 c.1842G>A 
 p.Thr614%3D 
 De novo 
  
 Multiplex 
 GEN1121R009 
 frameshift_variant 
 c.87del 
 p.Gly30ValfsTer53 
 Familial 
 Maternal 
 Multiplex 
 GEN1121R010 
 stop_gained 
 c.570C>A 
 p.Tyr190Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1121R011 
 splice_site_variant 
 c.709+2T>C 
  
 Familial 
 Maternal 
 Multiplex (monozygotic twins) 
 GEN1121R012 
 frameshift_variant 
 c.839dup 
 p.Asn281GlnfsTer14 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Deletion-Duplication
 26
 
4
Duplication
 1
 
4
Duplication
 2
 
4
Deletion-Duplication
 2
 
4
Duplication
 2
 
4
Deletion
 3
 
4
Deletion
 1
 
4
Duplication
 16
 
4
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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