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Relevance to Autism

Targeted sequencing of a cohort of 536 Chinese ASD probands and 1457 Chinese controls in Guo et al., 2017 identified a de novo damaging missense variant, two inherited loss-of-function variants, and an inherited damaging missense variant in the CPT2 gene in ASD probands. Transmission and De Novo Association (TADA) analysis of this cohort of Chinese ASD cases and controls in Guo et al., 2017 identified the CPT2 gene as an ASD candidate gene with a PTADA between 0.001 and 0.005 (0.001483); however, PTADA for this gene failed to reach significance (P < 0.01) following TADA analysis using a combined cohort of Chinese ASD probands and controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium.

Molecular Function

The protein encoded by this gene is a nuclear protein which is transported to the mitochondrial inner membrane. Together with carnitine palmitoyltransferase I, the encoded protein oxidizes long-chain fatty acids in the mitochondria. Defects in this gene are associated with mitochondrial long-chain fatty-acid (LCFA) oxidation disorders.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
ASD
OCD, learning disability
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN963R001 
 missense_variant 
 c.1547T>C 
 p.Phe516Ser 
 De novo 
  
  
 GEN963R002 
 frameshift_variant 
 c.852del 
 p.Glu285SerfsTer7 
 Familial 
  
  
 GEN963R003 
 frameshift_variant 
 c.1613del 
 p.Tyr538SerfsTer5 
 Familial 
  
  
 GEN963R004 
 missense_variant 
 c.499C>T 
 p.Arg167Trp 
 Familial 
  
  
 GEN963R005 
 synonymous_variant 
 c.867A>G 
 p.Ala289= 
 De novo 
  
 Simplex 
 GEN963R006 
 synonymous_variant 
 c.180C>T 
 p.Thr60%3D 
 De novo 
  
  
 GEN963R007 
 missense_variant 
 c.1049G>A 
 p.Arg350His 
 De novo 
  
 Simplex 
 GEN963R008 
 missense_variant 
 c.338C>T 
 p.Ser113Leu 
 Unknown 
  
 Simplex 
 GEN963R009a 
 frameshift_variant 
 c.1239_1240del 
 p.Lys414ThrfsTer7 
 Familial 
 Maternal 
 Simplex 
  et al.  
 GEN963R009b 
 missense_variant 
 c.1342T>C 
 p.Phe448Leu 
 Familial 
 Maternal 
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 1
 
1
Duplication
 1
 

No Animal Model Data Available

 

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