Summary Statistics:
ASD Reports: 5
Recent Reports: 1
Annotated variants: 44
Associated CNVs: 8
Evidence score: 3
Gene Score: 4
Relevance to Autism
Rare inherited loss-of-function and damaging missense variants in the COL28A1 gene were identified in ASD probands from the Simons Simplex Collection (Krumm et al., 2015) and in Chinese ASD probands (Guo et al., 2017). Transmission and De Novo Association (TADA) analysis of a cohort of 536 Chinese ASD probands and 1457 Chinese controls in Guo et al., 2017 identified the COL28A1 gene as an ASD candidate gene with a PTADA between 0.005 and 0.01 (0.004605); however, PTADA for this gene failed to reach significance (P < 0.01) following TADA analysis using a combined cohort of Chinese ASD probands and controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium.
Molecular Function
COL28A1 belongs to a class of collagens containing von Willebrand factor (VWF; MIM 613160) type A (VWFA) domains and may act as a cell-binding protein.
References
Primary
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
GEN964R001
stop_gained
c.2293C>T
p.Gln765Ter
Familial
Maternal
Simplex
GEN964R002
stop_gained
C>A
p.Glu755Ter
Familial
Paternal
Simplex
GEN964R003
stop_gained
C>A
p.Glu755Ter
Familial
Maternal
Simplex
GEN964R004
stop_gained
C>A
p.Glu755Ter
Familial
Paternal
Simplex
GEN964R005
stop_gained
C>A
p.Glu755Ter
Familial
Maternal
Simplex
GEN964R006
splice_site_variant
c.1929+2T>C
Familial
Paternal
Simplex
GEN964R007
missense_variant
G>A
p.Pro515Leu
Familial
Maternal
Simplex
GEN964R008
missense_variant
G>A
p.Pro515Leu
Familial
Maternal
Simplex
GEN964R009
missense_variant
G>A
p.Pro515Leu
Familial
Maternal
Simplex
GEN964R010
missense_variant
G>A
p.Pro515Leu
Familial
Paternal
Simplex
GEN964R011
missense_variant
c.1544C>T
p.Pro515Leu
Familial
Paternal
Simplex
GEN964R012
frameshift_variant
c.1307del
p.Asp436ValfsTer2
Familial
Maternal
Simplex
GEN964R013
missense_variant
c.1210G>A
p.Gly404Arg
Familial
Maternal
Simplex
GEN964R014
missense_variant
c.305T>C
p.Val102Ala
Familial
Maternal
Simplex
GEN964R015
missense_variant
c.305T>C
p.Val102Ala
Familial
Maternal
Simplex
GEN964R016
frameshift_variant
c.2684dup
p.Val898SerfsTer7
Familial
Maternal
Simplex
GEN964R017
missense_variant
c.2356T>A
p.Cys786Ser
Familial
Paternal
Simplex
GEN964R018
stop_gained
c.2293C>T
p.Gln765Ter
Familial
Paternal
Simplex
GEN964R019
stop_gained
c.2263G>T
p.Glu755Ter
Familial
Maternal
Simplex
GEN964R020
stop_gained
c.2263G>T
p.Glu755Ter
Familial
Paternal
Simplex
GEN964R021
stop_gained
c.2263G>T
p.Glu755Ter
Familial
Maternal
Simplex
GEN964R022
missense_variant
c.2165G>A
p.Gly722Asp
Familial
Maternal
Simplex
GEN964R023
missense_variant
c.1544C>T
p.Pro515Leu
Familial
Maternal
Simplex
GEN964R024
missense_variant
c.1544C>T
p.Pro515Leu
Familial
Maternal
Simplex
GEN964R025
frameshift_variant
c.1307del
p.Asp436ValfsTer2
Familial
Maternal
Simplex
GEN964R026
frameshift_variant
c.1307del
p.Asp436ValfsTer2
Familial
Paternal
Simplex
GEN964R027
frameshift_variant
c.1307del
p.Asp436ValfsTer2
Familial
Paternal
Simplex
GEN964R028
missense_variant
c.305T>C
p.Val102Ala
Familial
Paternal
Simplex
GEN964R029
missense_variant
c.202A>G
p.Lys68Glu
Familial
Maternal
Simplex
GEN964R030
splice_site_variant
c.124+2T>A
Familial
Maternal
Simplex
GEN964R031
splice_site_variant
c.124+2T>A
Familial
Paternal
Simplex
GEN964R032
splice_site_variant
c.124+2T>A
Familial
Maternal
Simplex
GEN964R033
frameshift_variant
c.2684dup
p.Val898SerfsTer7
Familial
GEN964R034
splice_site_variant
c.1791+1G>T
Familial
GEN964R035
stop_gained
c.1474C>T
p.Arg492Ter
Familial
GEN964R036
splice_site_variant
c.1096-1G>A
Familial
GEN964R037
frameshift_variant
c.989del
p.Pro330GlnfsTer108
Familial
GEN964R038
missense_variant
c.2165G>A
p.Gly722Asp
Familial
GEN964R039
stop_gained
c.2293C>T
p.Gln765Ter
Familial
Maternal
Multiplex (monozygotic twins)
GEN964R040
splice_site_variant
c.814-2A>T
Familial
Paternal
Multiplex
GEN964R041
missense_variant
c.2940T>G
p.Ile980Met
De novo
Simplex
GEN964R042
missense_variant
c.2006C>T
p.Pro669Leu
De novo
Simplex
GEN964R043
stop_gained
c.1286C>G
p.Ser429Ter
De novo
Simplex
GEN964R044
stop_gained
c.2293C>T
p.Gln765Ter
Familial
Maternal
Multiplex
No Common Variants Available
7
Deletion-Duplication
30
No Animal Model Data Available
No PIN Data Available