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Relevance to Autism

A de novo nonsense variant in the CNGB3 gene was identified in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014; this variant was later determined to be a postzygotic mosaic mutation (PZM) in Lim et al., 2017. A second non-synonymous PZM in this gene was identified in an ASD proband in Lim et al., 2017; comparison with a background set of 84,448 privately inherited variants demonstrated that this gene harbored more PZMs than expected based on background rates (2/571 observed vs. 5/84,448 expected; hypergeometric P-value of 4.5E-04).

Molecular Function

This gene encodes the beta subunit of a cyclic nucleotide-gated ion channel. The encoded beta subunit appears to play a role in modulation of channel function in cone photoreceptors. This heterotetrameric channel is necessary for sensory transduction, and mutations in this gene have been associated with achromatopsia 3, progressive cone dystrophy, and juvenile macular degeneration, also known as Stargardt Disease.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN925R001 
 stop_gained 
 c.2348C>A 
 p.Ser783Ter 
 De novo 
  
  
 GEN925R002 
 missense_variant 
 c.2171A>T 
 p.Glu724Val 
 De novo 
  
 Simplex 
 GEN925R003 
 stop_gained 
 c.2086C>T 
 p.Arg696Ter 
 Familial 
 Paternal 
 Multiplex (monozygotic twins) 
 GEN925R004 
 frameshift_variant 
 c.894_898del 
 p.Lys299SerfsTer11 
 Familial 
 Paternal 
 Simplex 
 GEN925R005 
 missense_variant 
 c.1946A>G 
 p.Lys649Arg 
 Unknown 
  
  
 GEN925R006 
 splice_region_variant 
 c.494-8dup 
  
 De novo 
  
  
 GEN925R007 
 missense_variant 
 c.1717G>A 
 p.Gly573Arg 
 De novo 
  
  
 GEN925R008 
 synonymous_variant 
 c.1504C>T 
 p.Leu502%3D 
 De novo 
  
  
 GEN925R009 
 missense_variant 
 c.1591C>A 
 p.Gln531Lys 
 De novo 
  
 Simplex 
 GEN925R010 
 synonymous_variant 
 c.231T>C 
 p.Asn77%3D 
 De novo 
  
 Simplex 
 GEN925R011 
 stop_gained 
 c.2410A>T 
 p.Lys804Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN925R012 
 stop_gained 
 c.2086C>T 
 p.Arg696Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN925R013 
 stop_gained 
 c.2086C>T 
 p.Arg696Ter 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Deletion
 1
 
8
Deletion
 1
 
8
Deletion
 1
 
8
Deletion-Duplication
 12
 
8
Duplication
 3
 
8
Duplication
 1
 
8
Deletion-Duplication
 14
 

No Animal Model Data Available

No PIN Data Available
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