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Relevance to Autism

A de novo nonsense variant in the CMPK2 gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014), while a de novo frameshift variant in this gene was observed in an ASD proband from a multiplex family from the iHART cohort (Ruzzo et al., 2019). TADA analysis of de novo and transmitted variants from iHART, the Simons Simplex Collection, the Autism Sequencing Consortium, and the Autism Genome Project in Ruzzo et al., 2019 identified CMPK2 as an ASD candidate gene with a false discovery rate (FDR) < 0.1.

Molecular Function

This gene encodes one of the enzymes in the nucleotide synthesis salvage pathway that may participate in terminal differentiation of monocytic cells.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1098R001 
 stop_gained 
 c.1306C>T 
 p.Gln436Ter 
 De novo 
  
 Simplex 
 GEN1098R002 
 frameshift_variant 
 c.466del 
 p.Ala156HisfsTer113 
 De novo 
  
 Multiplex 
 GEN1098R003 
 splice_site_variant 
 c.1227-2A>C 
  
 Unknown 
  
  
 GEN1098R004 
 frameshift_variant 
 c.464del 
 p.Glu155GlyfsTer114 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 7
 
2
Deletion
 4
 
2
Deletion-Duplication
 4
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 3
 

No Animal Model Data Available

No PIN Data Available
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