HELP     Sign In
Search

Relevance to Autism

CLTC was classified as an ASD candidate gene in males in Kim et al., 2024 following a combined TADA analysis consisting of a novel Korean ASD cohort in addition to the Simons Simplex Collection and the SPARK cohort. De novo ASD-associated variants in CLTC included three de novo loss-of-function variants (two in probands from the Autism Sequencing Consortium, one in a proband from the MSSNG cohort), a de novo missense variant predicted to be deleterious by REVEL and MPC in a SPARK proband, and a de novo missense variant with a CADD score > 20 in a Korean ASD proband (De Rubeis et al., 2012; Satterstrom et al., 2020; Zhou et al., 2022; Wang et al., 2023; Kim et al., 2024). Heterozygous mutations in this gene are also responsible for autosomal dominant intellectual developmental disorder-56 (MRD56; OMIM 617854); autism reported in 3/10 individuals with de novo CLTC variants in Nabais S et al., 2020.

Molecular Function

Clathrin is a major protein component of the cytoplasmic face of intracellular organelles, called coated vesicles and coated pits. These specialized organelles are involved in the intracellular trafficking of receptors and endocytosis of a variety of macromolecules. The basic subunit of the clathrin coat is composed of three heavy chains and three light chains.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
De novo CLTC variants are associated with a variable phenotype from mild to severe intellectual disability, microcephaly, hypoplasia of the corpus callosum, and epilepsy
Autosomal dominant intellectual developmental diso
ASD, ADHD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1480R001 
 missense_variant 
 c.445G>T 
 p.Ala149Ser 
 De novo 
  
  
 GEN1480R002 
 synonymous_variant 
 c.3048T>C 
 p.Ser1016= 
 De novo 
  
  
 GEN1480R003 
 stop_gained 
 c.1962C>G 
 p.Tyr654Ter 
 De novo 
  
  
 GEN1480R004 
 frameshift_variant 
 c.1953del 
 p.Val652SerfsTer9 
 De novo 
  
  
 GEN1480R005 
 frameshift_variant 
 c.430dup 
 p.Arg144ProfsTer4 
 De novo 
  
 Simplex 
 GEN1480R006 
 missense_variant 
 c.4717T>C 
 p.Cys1573Arg 
 De novo 
  
  
 GEN1480R007 
 missense_variant 
 c.4133T>C 
 p.Met1378Thr 
 De novo 
  
 Simplex 
 GEN1480R008 
 frameshift_variant 
 c.1226del 
 p.Gly409ValfsTer25 
 De novo 
  
  
 GEN1480R009 
 stop_gained 
 c.2272C>T 
 p.Arg758Ter 
 De novo 
  
  
 GEN1480R010 
 inframe_deletion 
 c.2325_2327del 
 p.Ile776del 
 De novo 
  
  
 GEN1480R011 
 missense_variant 
 c.2669C>T 
 p.Pro890Leu 
 De novo 
  
  
 GEN1480R012 
 inframe_deletion 
 c.2794_2796del 
 p.Asn932del 
 De novo 
  
  
 GEN1480R013 
 splice_site_variant 
 c.2919+1G>C 
 p.? 
 De novo 
  
  
 GEN1480R014 
 splice_site_variant 
 c.3065+1G>A 
 p.? 
 De novo 
  
  
 GEN1480R015 
 inframe_deletion 
 c.3621_3623del 
 p.Asp1207del 
 De novo 
  
  
 GEN1480R016 
 missense_variant 
 c.3765G>C 
 p.Glu1255Asp 
 De novo 
  
  
 GEN1480R017 
 splice_site_variant 
 c.3766-2A>G 
 p.? 
 De novo 
  
  
 GEN1480R018 
 stop_gained 
 c.4366C>T 
 p.Gln1456Ter 
 De novo 
  
  
 GEN1480R019 
 frameshift_variant 
 c.4481del 
 p.Ser1494CysfsTer32 
 Unknown 
 Not maternal 
  
 GEN1480R020 
 stop_gained 
 c.4615C>T 
 p.Gln1539Ter 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 2
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.