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Relevance to Autism

Calsyntenin-3, a protein encoded by the CLSTN3 gene, was identified as a synapse-organizing protein unique in binding and recruiting alpha-neurexins, but not beta-neurexins; interestingly, the majority of NRXN variations associated with ASD and schizophrenia selectively affect alpha-neurexins. Additional studies demonstrated that calsyntenin-3 is required for normal functional GABAergic and glutamatergic synapse development (Pettem et al., 2013).

Molecular Function

May modulate calcium-mediated postsynaptic signals and forms a complex with APBA2 and APP. Subcellular localization is most prominent in the postsynaptic specializations of asymmetric (type I) synapses with both axodendritic and axospinous localization. Present throughout all cortical layers of the brain, with highest levels in GABAergic neurons.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The specific -neurexin interactor calsyntenin-3 promotes excitatory and inhibitory synapse development.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Non-coding de novo mutations in chromatin interactions are implicated in autism spectrum disorder
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN579R001 
 stop_gained 
 c.1447C>T 
 p.Arg483Ter 
 De novo 
  
 Unknown 
 GEN579R002 
 missense_variant 
 c.599T>C 
 p.Ile200Thr 
 De novo 
  
 Multiplex 
 GEN579R003 
 missense_variant 
 c.2727G>A 
 p.Met909Ile 
 De novo 
  
  
 GEN579R004 
 missense_variant 
 c.1597C>T 
 p.Arg533Cys 
 De novo 
  
  
 GEN579R005a 
 missense_variant 
 c.11T>A 
 p.Leu4Gln 
 Familial 
 Both parents 
 Simplex 
 GEN579R006 
 missense_variant 
 c.1618C>T 
 p.Arg540Cys 
 De novo 
  
  
 GEN579R007 
 missense_variant 
 c.1649G>A 
 p.Arg550Gln 
 De novo 
  
  
 GEN579R008 
 missense_variant 
 c.436G>A 
 p.Val146Met 
 De novo 
  
  
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Deletion-Duplication
 27
 
12
Duplication
 5
 
12
Deletion
 1
 
12
Duplication
 2
 
12
Duplication
 1
 
12
Duplication
 4
 
12
Duplication
 1
 

Model Summary

calsyntenin-3 KO mice display impaired synaptogenesis.

References

Type
Title
Author, Year
Primary
The specific -neurexin interactor calsyntenin-3 promotes excitatory and inhibitory synapse development.
Model Type: Genetic
Model Genotype: Homozygous
Mutation: Exon 2 and 3 of the Clstn3 locus were floxed and excised by crossing with EIIa- Cre mice, resulting in a truncating frameshift.
Allele Type: Targeted (Knock out)
Strain of Origin: 129S7
Genetic Background: C57BL/6
ES Cell Line: 129/Ola
Mutant ES Cell Line:
Model Source:
Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synaptic morphology1
Decreased
 Immunohistochemistry
 Unreported
Synaptic transmission1
Decreased
 Whole-cell patch clamp
 Unreported
Epsp-spike relationship1
Increased
 Field potential recordings
 Unreported
General characteristics1
 No change
 General observations
 Unreported
Protein modification process1
 No change
 Western blot
 Unreported
Brain morphology1
 No change
 Fluorescence microscopy
 Unreported
Presynaptic function: paired-pulse facilitation1
 No change
 Field potential recordings
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 321 Q59G28 Y2H; IP/WB
Araki Y , et al. 2003
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
NRXN1a neurexin 1 60391 Q63372 GST; IP/WB
Pettem KL , et al. 2013
SCNN1D Amiloride-sensitive sodium channel subunit delta 6339 P51172 IP; LC-MS/MS
Huttlin EL , et al. 2015
ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 7903 Q92187 IP; LC-MS/MS
Huttlin EL , et al. 2015
TCTN2 Tectonic-2 79867 Q96GX1 IP; LC-MS/MS
Huttlin EL , et al. 2015

FMR1
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