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Relevance to Autism

Quantitative GWAS analysis of 2,509 ASD probands from a German cohort and the Autism Genome Project in Yousaf et al., 2020 identified two intronic SNPs in the CLIP2 gene (rs34459814 and rs34083004) that each reached genome-wide significance for association with the Social Interaction subdomain of the Autism Diagnostic Interview-Revised (ADI-R) (P-values 2.5E-08 and 3.7E-08, respectively).

Molecular Function

The protein encoded by this gene belongs to the family of cytoplasmic linker proteins, which have been proposed to mediate the interaction between specific membranous organelles and microtubules. This protein was found to associate with both microtubules and an organelle called the dendritic lamellar body. This gene is hemizygously deleted in Williams syndrome, a multisystem developmental disorder caused by the deletion of contiguous genes at 7q11.23.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder
ASD
ASD sub-phenotype

Rare

No Rare Variants Available

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1195C001 
 intron_variant 
 rs34459814 
 c.2563+376G>A;c.2458+376G>A 
  
 2,509 ASD probands (1895 cases from the Autism Genome Project, 614 cases from a German ASD cohort): 86.64% male, mean age 109.38 63.66 months 
 Discovery 
 GEN1195C002 
 intron_variant 
 rs34083004 
 c.2563+1011G>A;c.2458+1011G>A 
  
 2,509 ASD probands (1895 cases from the Autism Genome Project, 614 cases from a German ASD cohort): 86.64% male, mean age 109.38 63.66 months 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Deletion
 1
 
7
Duplication
 9
 
7
Deletion
 2
 
7
Deletion-Duplication
 78
  construct
7
Deletion
 3
 

No Animal Model Data Available

 

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