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Relevance to Autism

De novo damaging missense variants in the CHMP1A gene were identifed in ASD probands from the Simons Simplex Collection and the Autism Sequencing Consortium (De Rubeis et al., 2014; Iossifov et al., 2014). Rare inherited loss-of-function variants in this gene were observed in ASD probands from the Simons Simplex Collection (Krumm et al., 2015) and in a cohort of Chinese ASD probands (Guo et al., 2017). Transmission and De Novo Association (TADA) analysis of a combined cohort consisting of 536 Chinese ASD probands and 1457 Chinese controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium, in Guo et al., 2017 identified CHMP1A as an ASD candidate gene with a PTADA of 0.001528.

Molecular Function

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Homozygous mutations in the CHMP1A gene are associated with pontocerebellar hypoplasia type 8 (PCH8; OMIM 614961), a neurodevelopmental disorder characterized by severe psychomotor retardation, abnormal movements, hypotonia, spasticity, and variable visual defects (Mochida et al., 2012).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
CHMP1A encodes an essential regulator of BMI1-INK4A in cerebellar development.
Pontocerebellar hypoplasia type 8 (PCH8)
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN949R001 
 missense_variant 
 c.160C>T 
 p.Arg54Cys 
 De novo 
  
  
 GEN949R002 
 missense_variant 
 c.202C>T 
 p.Gln68Ter 
 De novo 
  
 Simplex 
 GEN949R003 
 missense_variant 
 c.45C>T 
 p.Gly15= 
 Familial 
 Paternal 
 Simplex 
 GEN949R004 
 stop_gained 
 c.487C>T 
 p.Arg163Ter 
 Familial 
 Paternal 
 Simplex 
 GEN949R005 
 stop_gained 
 c.127C>T 
 p.Arg43Ter 
 Familial 
 Paternal 
 Simplex 
 GEN949R006 
 stop_gained 
 c.487C>T 
 p.Arg163Ter 
 Familial 
 Maternal 
 Simplex 
 GEN949R007 
 missense_variant 
 c.45C>T 
 p.Gly15= 
 Familial 
 Maternal 
 Simplex 
 GEN949R008 
 stop_gained 
 c.127C>T 
 p.Arg43Ter 
 Familial 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Duplication
 1
 
16
Duplication
 2
 
16
Duplication
 6
 
16
Duplication
 1
 
16
Duplication
 1
 
16
Deletion-Duplication
 3
 
16
Deletion
 12
 
16
Deletion-Duplication
 34
 

No Animal Model Data Available

 

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