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Relevance to Autism

De novo missense variants in the CHD9 gene have been identified in ASD probands from the Simons Simplex Collection and the Autism Sequencing Consortium (Iossifov et al., 2014; Lim et al., 2017; Satterstrom et al., 2020), as well as in a patient from a cohort of 87 families with neurodevelopmental disorders who presented with ASD and no speech development (Alvarez-Mora et al., 2022). Targeted sequencing of 136 microcephaly or macrocephaly-related genes and 158 possible ASD risk genes in 536 Chinese ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Li et al., 2017 identified additional missense variants in the CHD9 gene.

Molecular Function

Predicted to enable ATP binding activity; ATP-dependent activity, acting on DNA; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and chromatin organization. Located in cytosol and nucleoplasm.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Recent Recommendation
Diagnostic yield of next-generation sequencing in 87 families with neurodevelopmental disorders
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1303R001 
 missense_variant 
 c.6433T>C 
 p.Ser2145Pro 
 De novo 
  
 Simplex 
 GEN1303R002 
 missense_variant 
 c.8543G>C 
 p.Arg2848Thr 
 De novo 
  
  
 GEN1303R003 
 missense_variant 
 c.2519C>T 
 p.Pro840Leu 
 Unknown 
  
  
 GEN1303R004 
 missense_variant 
 c.5675C>A 
 p.Ser1892Tyr 
 Unknown 
  
  
 GEN1303R005 
 missense_variant 
 c.2516G>A 
 p.Arg839His 
 Unknown 
  
  
 GEN1303R006 
 missense_variant 
 c.1066C>T 
 p.Pro356Ser 
 Unknown 
  
  
 GEN1303R007 
 missense_variant 
 c.6494C>T 
 p.Ser2165Phe 
 Unknown 
  
  
 GEN1303R008 
 missense_variant 
 c.5368A>G 
 p.Thr1790Ala 
 Unknown 
  
  
 GEN1303R009 
 missense_variant 
 c.2273A>T 
 p.His758Leu 
 Unknown 
  
  
 GEN1303R010 
 missense_variant 
 c.3557T>A 
 p.Leu1186His 
 De novo 
  
  
 GEN1303R011 
 missense_variant 
 c.6892A>G 
 p.Thr2298Ala 
 De novo 
  
  
 GEN1303R012 
 missense_variant 
 c.3772A>C 
 p.Thr1258Pro 
 De novo 
  
 Simplex 
 GEN1303R013 
 missense_variant 
 c.2191G>A 
 p.Ala731Thr 
 De novo 
  
  
 GEN1303R014 
 missense_variant 
 c.4441C>T 
 p.Arg1481Trp 
 De novo 
  
  
 GEN1303R015 
 splice_site_variant 
 c.5511-1G>T 
  
 De novo 
  
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion
 1
 
16
Deletion-Duplication
 13
 

No Animal Model Data Available

 

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