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Relevance to Autism

Mice with brain-specific deletion of the Chd5 gene (Chd5 -/-) displayed dendritic alterations in cortical pryamidal neurons, abnormalities in socialization and communication, and deficits in behavioral measures of empathy (Pisansky et al., 2017). A de novo damaging missense variant in the CHD5 gene was identified in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014.

Molecular Function

This gene encodes a member of the chromodomain helicase DNA-binding protein family. Members of this family are characterized by a chromodomain, a helicase ATP-binding domain and an additional functional domain. This gene encodes a neuron-specific protein that may function in chromatin remodeling and gene transcription.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mice lacking the chromodomain helicase DNA-binding 5 chromatin remodeler display autism-like characteristics.
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
Speech delay, motor delay, developmental regressio
Autistic features
Recent Recommendation
Missense and truncating variants in CHD5 in a dominant neurodevelopmental disorder with intellectual disability, behavioral disturbances, and epilepsy
DD, ID, epilepsy/seizures
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN912R001 
 missense_variant 
 c.3235C>T 
 p.Arg1079Trp 
 De novo 
  
  
 GEN912R002 
 synonymous_variant 
 c.2371C>A 
 p.Arg791= 
 De novo 
  
 Simplex 
 GEN912R003 
 splice_site_variant 
 c.5857+2T>C 
  
 Familial 
 Maternal 
 Multiplex 
 GEN912R004 
 missense_variant 
 c.2565C>A 
 p.Asn855Lys 
 Unknown 
  
 Unknown 
 GEN912R005 
 missense_variant 
 c.577C>T 
 p.Arg193Trp 
 Familial 
 Maternal 
 Extended multiplex 
 GEN912R006 
 missense_variant 
 c.578G>A 
 p.Arg193Gln 
 De novo 
  
 Simplex 
 GEN912R007 
 frameshift_variant 
 c.612dup 
 p.Ser205LeufsTer88 
 Unknown 
 Not maternal 
  
 GEN912R008 
 stop_gained 
 c.940G>T 
 p.Glu314Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN912R009 
 missense_variant 
 c.1279G>A 
 p.Glu427Lys 
 De novo 
  
 Simplex 
 GEN912R010 
 stop_gained 
 c.1786C>T 
 p.Arg596Ter 
 Unknown 
 Not maternal 
 Extended multiplex 
 GEN912R011 
 missense_variant 
 c.2735C>T 
 p.Ser912Phe 
 De novo 
  
 Simplex 
 GEN912R012 
 missense_variant 
 c.3250G>A 
 p.Asp1084Asn 
 De novo 
  
 Simplex 
 GEN912R013 
 missense_variant 
 c.3371C>T 
 p.Pro1124Leu 
 De novo 
  
  
 GEN912R014 
 missense_variant 
 c.3407G>A 
 p.Arg1136His 
 De novo 
  
  
 GEN912R015 
 missense_variant 
 c.3419A>T 
 p.Asn1140Ile 
 De novo 
  
 Simplex 
 GEN912R016 
 splice_region_variant 
 c.4079-3C>G 
  
 De novo 
  
  
 GEN912R017 
 splice_site_variant 
 c.4171+1G>C 
  
 De novo 
  
 Simplex 
 GEN912R018 
 missense_variant 
 c.4257C>G 
 p.Ile1419Met 
 De novo 
  
  
 GEN912R019 
 missense_variant 
 c.4463A>T 
 p.Asp1488Val 
 De novo 
  
 Simplex 
 GEN912R020 
 missense_variant 
 c.5141A>G 
 p.Glu1714Gly 
 De novo 
  
  
 GEN912R021 
 missense_variant 
 c.2231A>G 
 p.Lys744Arg 
 De novo 
  
 Simplex 
 GEN912R022 
 synonymous_variant 
 c.3939G>A 
 p.Glu1313%3D 
 Unknown 
  
  
 GEN912R023 
 missense_variant 
 c.5684C>T 
 p.Ser1895Leu 
 De novo 
  
  
 GEN912R024 
 synonymous_variant 
 c.5667C>T 
 p.Ala1889%3D 
 De novo 
  
  
 GEN912R025 
 missense_variant 
 c.5444C>T 
 p.Thr1815Met 
 De novo 
  
 Simplex 
 GEN912R026 
 missense_variant 
 c.4487C>A 
 p.Ser1496Tyr 
 De novo 
  
  
 GEN912R027 
 missense_variant 
 c.2359C>T 
 p.Arg787Cys 
 De novo 
  
  
 GEN912R028 
 splice_site_variant 
 c.745+2T>C 
  
 De novo 
  
  
 GEN912R029 
 missense_variant 
 c.656C>T 
 p.Thr219Met 
 De novo 
  
  
 GEN912R030 
 missense_variant 
 c.4502T>G 
 p.Leu1501Arg 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 15
 
1
Deletion
 1
 
1
Deletion-Duplication
 15
 
1
Deletion
 1
 
1
Deletion
 2
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Deletion-Duplication
 1
 
1
Duplication
 1
 
1
Deletion
 4
 
1
Deletion
 6
 
1
Deletion
 4
 

Model Summary

The forebrains of Chd5 homozygous knockout mice show altered gene expression of genes important in cellular development and signaling. Chd5 homozygous knockout mice exhibit abnormal social and communicative behavior and a decreased preference for novelty. Chd5 homozygous knockout mice show deficits in responding to the distress of a conspecific, but no change in explicit direct fear conditioning.

References

Type
Title
Author, Year
Primary
Mice lacking the chromodomain helicase DNA-binding 5 chromatin remodeler display autism-like characteristics.

M_CHD5_1_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exon 2 of the Chd5 gene using Nestin-cre, in neuronal, glial and other cell types in the central and peripheral nervous system
Allele Type: Conditional loss-of-function
Strain of Origin:
Genetic Background: C57BL/6 J
ES Cell Line: C57BL/6 J
Mutant ES Cell Line: C57BL/6 J
Model Source: EUCOMM consortium

M_CHD5_2_CKO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Conditional heterozygous deletion of exon 2 of the Chd5 gene using Nestin-cre, in neuronal, glial and other cell types in the central and peripheral nervous system
Allele Type: Conditional loss-of-function
Strain of Origin:
Genetic Background: C57BL/6 J
ES Cell Line: C57BL/6 J
Mutant ES Cell Line: C57BL/6 J
Model Source: EUCOMM consortium

M_CHD5_1_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Social memory1
Decreased
Description: Mutants spend less time investigating a novel over a familiar conspecific mouse, compared to controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Not reported
Social fear conditioning: memory of context1
Decreased
Description: Mutant observer mice exhibited less freezing during foot shock conditioning of familiar demonstrator mice compared to wild-type observer mice that froze more during foot shock conditioning of the demonstrator mice, and this behavior was greater for observers that were siblings and cagemates of demonstrators and thereby familiar. this effect was not because of changes in usvs emitted by the demonstrator mice. activity measurements of mutant and control observer mice, recorded either 0-5 s or 5-60 s after demonstrator conditioning indicated equivalent initial immobility but sustained freezing only in wild-type mice. familiar/mutant mice exhibited initial escape behavior during acclimation that was not maintained through conditioning whereas familiar/wild-type
Exp Paradigm: Foot shock applied to a demonstrator mouse elicits fear behavior in an observer mouse. freezing in observer mice was measured using a load cell transducer system, which measures force-generated locomotor activity concurrent with demonstrator conditioning.
 Fear conditioning test
 Not reported
Social approach1
Decreased
Description: Mutants spend less time investigating an enclosed, unfamiliar conspecific mouse, compared to controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Not reported
Ultrasonic vocalization: isolation induced1
Decreased
Description: Mutant pups produce fewer isolation induced usvs compared to controls. on p6, mutant pups produced fewer complex, frequency modulated usvs, compared to controls.
Exp Paradigm: NA
 Monitoring ultrasonic vocalizations
 P6-12
Response to novelty1
Decreased
Description: Mutants show less overall investigation of novel olfactory stimuli, compared to controls.
Exp Paradigm: Mice were presented with control (water) odor followed by three distinct, successive odors (vanilla, female bedding, male bedding) of three trials each.
 Habituation-dishabituation test
 Not reported
Anxiety1
Increased
Description: Mutants spend less time in the center of the open field compared to controls.
Exp Paradigm: NA
 Open field test
 Not reported
Object recognition memory1
Decreased
Description: Mutants spend less time with a novel object than a familiar object, compared to controls.
Exp Paradigm: NA
 Novel object recognition test
 Not reported
Gene expression1
Abnormal
Description: Mutants show downregulation of genes involved in cellular growth and proliferation, cell death and survival, cell movement, dna replication, recombination, and repair, and up-regulation of genes involved in inter-cellular signaling and interaction, molecular transport, and, vitamin and mineral metabolism, compared to controls. 23 is regulated genes in the chd5 mutant matched with genes in the autismkb database.
Exp Paradigm: Rna sequencing
 Rna sequencing
 Not reported
Gene expression1
Abnormal
Description: Mutants show downregulation of genes involved in cellular growth and proliferation, cell death and survival, cell movement, dna replication, recombination, and repair, and up-regulation of genes involved in inter-cellular signaling and interaction, molecular transport, and, vitamin and mineral metabolism, compared to controls. 23 is regulated genes in the chd5 mutant matched with genes in the autismkb database.
Exp Paradigm: Quantitative pcr (qrt-pcr)
 Quantitative pcr (qrt-pcr)
 Not reported
Targeted expression1
Decreased
Description: Mutants show almost complete loss of the chd5 protein in whole-brain extracts, compared to controls.
Exp Paradigm: NA
 Western blot
 Adult
General characteristics1
 No change
 General observations
 Not reported
Mortality/lethality: embryonic1
 No change
 General observations
 P0
Anxiety1
 No change
 Elevated plus maze test
 Not reported
Exploratory activity: habituation1
 No change
 Habituation-dishabituation test
 Not reported
Cued or contextual fear conditioning1
 No change
 Fear conditioning test
 Not reported
Cued or contextual fear conditioning: extinction1
 No change
 Fear conditioning test
 Not reported
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 Not reported
Cued or contextual fear conditioning: memory of cue1
 No change
 Fear conditioning test
 Not reported
General locomotor activity1
 No change
 Open field test
 Not reported
General locomotor activity: ambulatory activity1
 No change
 Open field test
 Not reported
Sensorimotor gating1
 No change
 Prepulse inhibition
 Not reported
 Not Reported: Circadian sleep/wake cycle, Immune response, Maternal behavior, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure

M_CHD5_2_CKO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Targeted expression1
 No change
 Western blot
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

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