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Relevance to Autism

A de novo damaging missense variant and a de novo frameshift variant in the CHD1 gene have been identified in ASD probands from the Autism Sequencing Consortium and the Simons Simplex Collection (Neale et al., 2012; Iossifov et al., 2014). Pilarowski et al., 2017 described six patients with heterozygous CHD1 missense variants; two of these patients were diagnosed with autism.

Molecular Function

The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
ASD
DD, ID
Support
Recurrent de novo mutations implicate novel genes underlying simplex autism risk.
ASD
Support
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
ASD
Recent Recommendation
Missense variants in the chromatin remodeler CHD1 are associated with neurodevelopmental disability.
DD
ASD, ID, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN971R001 
 missense_variant 
 c.3046C>G 
 p.Leu1016Val 
 De novo 
  
 Simplex 
 GEN971R002 
 frameshift_variant 
 c.4550dup 
 p.Leu1517PhefsTer7 
 De novo 
  
 Simplex 
 GEN971R003 
 missense_variant 
 c.1853G>A 
 p.Arg618Gln 
 De novo 
  
  
 GEN971R004 
 missense_variant 
 c.5123G>A 
 p.Arg1708Gln 
 Unknown 
  
 Multiplex 
 GEN971R005 
 missense_variant 
 c.1379G>A 
 p.Arg460Lys 
 De novo 
  
  
 GEN971R006 
 missense_variant 
 c.2570A>G 
 p.Asp857Gly 
 De novo 
  
  
 GEN971R007 
 missense_variant 
 c.421A>G 
 p.Arg141Gly 
 Unknown 
  
  
 GEN971R008 
 missense_variant 
 c.3608G>A 
 p.Arg1203Gln 
 De novo 
  
 Simplex 
 GEN971R009 
 missense_variant 
 c.2157T>A 
 p.Ser719Arg 
 Unknown 
  
  
 GEN971R010 
 frameshift_variant 
 c.13_14del 
 p.Ser5Ter 
 Unknown 
  
  
 GEN971R011 
 missense_variant 
 c.5069C>A 
 p.Pro1690Gln 
 De novo 
  
  
 GEN971R012 
 synonymous_variant 
 c.990C>T 
 p.Asn330%3D 
 De novo 
  
  
 GEN971R013 
 synonymous_variant 
 c.258T>C 
 p.Phe86%3D 
 De novo 
  
 Simplex 
 GEN971R014 
 missense_variant 
 c.5113T>C 
 p.Ser1705Pro 
 De novo 
  
 Simplex 
 GEN971R015 
 missense_variant 
 c.2092G>A 
 p.Val698Ile 
 Familial 
 Paternal 
  
 GEN971R016 
 missense_variant 
 c.4757G>A 
 p.Arg1586His 
 Familial 
 Paternal 
 Simplex 
 GEN971R017 
 missense_variant 
 c.315G>C 
 p.Gln105His 
 Unknown 
  
  
  et al.  
 GEN971R018 
 intron_variant 
 c.2569-11A>G 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Duplication
 2
 
5
Duplication
 1
 
5
Deletion
 1
 

No Animal Model Data Available

 

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