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Relevance to Autism

De novo missense variants in the CERT1 gene have been identified in multiple ASD probands (De Rubeis et al., 2014; Iossifov et al., 2014; Takata et al., 2018; Zhou et al., 2022). Three male patients with impaired intellectual development from the Deciphering Developmental Disorders 2015 study were identified with the same de novo p.Ser132Leu missense variant in the CERT1 gene; one of these three patients also presented with stereotypic behavior. Gehin et al., 2023 characterized 31 unrelated individuals with 22 CERT1 missense variants presenting with a neurodevelopmental syndrome characterized by infantile hypotonia, mild dysmorphic features, variable degrees of intellectual disability, motor and speech delays, increased pain tolerance, and seizures; 19/27 (70%) of the individuals in this study were either diagnosed with autism spectrum disorder (ASD) or presented with possible ASD, and several of the CERT1 missense variants identified in affected individuals were experimentally shown to result in gain-of-function effects.

Molecular Function

This gene encodes a kinase that specifically phosphorylates the N-terminal region of the non-collagenous domain of the alpha 3 chain of type IV collagen, known as the Goodpasture antigen. Goodpasture disease is the result of an autoimmune response directed at this antigen. One isoform of this protein is also involved in ceramide intracellular transport.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD or autistic features, DD, ID
ADHD, epilepsy/seizures, stereotypy
Support
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Autosomal dominant intellectual developmental diso
Stereotypy
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1398R001 
 missense_variant 
 c.928T>C 
 p.Phe310Leu 
 De novo 
  
  
 GEN1398R002 
 synonymous_variant 
 c.2238A>G 
 p.Ala746%3D 
 De novo 
  
  
 GEN1398R003 
 missense_variant 
 c.880A>G 
 p.Thr294Ala 
 De novo 
  
 Simplex 
 GEN1398R004 
 missense_variant 
 c.561T>G 
 p.Asp187Glu 
 De novo 
  
 Simplex 
 GEN1398R005 
 missense_variant 
 c.1751A>G 
 p.His584Arg 
 De novo 
  
  
 GEN1398R006 
 missense_variant 
 c.676C>T 
 p.Arg226Cys 
 De novo 
  
  
 GEN1398R007 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
 Simplex 
 GEN1398R008 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
 Simplex 
 GEN1398R009 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
 Simplex 
 GEN1398R010 
 missense_variant 
 c.663T>G 
 p.Ser221Arg 
 Unknown 
  
  
 GEN1398R011 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
  
 GEN1398R012 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
  
 GEN1398R013 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
  
 GEN1398R014 
 missense_variant 
 c.779C>T 
 p.Ser260Leu 
 De novo 
  
  
 GEN1398R015 
 missense_variant 
 c.787T>C 
 p.Ser263Pro 
 De novo 
  
  
 GEN1398R016 
 missense_variant 
 c.787T>C 
 p.Ser263Pro 
 De novo 
  
  
 GEN1398R017 
 missense_variant 
 c.797C>G 
 p.Ser266Cys 
 De novo 
  
  
 GEN1398R018 
 missense_variant 
 c.797C>G 
 p.Ser266Cys 
 De novo 
  
  
 GEN1398R019 
 missense_variant 
 c.880A>G 
 p.Thr294Ala 
 De novo 
  
  
 GEN1398R020 
 missense_variant 
 c.880A>G 
 p.Thr294Ala 
 De novo 
  
  
 GEN1398R021 
 missense_variant 
 c.880A>G 
 p.Thr294Ala 
 De novo 
  
  
 GEN1398R022 
 missense_variant 
 c.1111G>A 
 p.Gly371Arg 
 De novo 
  
  
 GEN1398R023 
 missense_variant 
 c.1111G>A 
 p.Gly371Arg 
 De novo 
  
  
 GEN1398R024 
 missense_variant 
 c.1112G>A 
 p.Gly371Glu 
 De novo 
  
  
 GEN1398R025 
 missense_variant 
 c.1124C>T 
 p.Thr375Ile 
 De novo 
  
  
 GEN1398R026 
 missense_variant 
 c.1135A>G 
 p.Thr379Ala 
 De novo 
  
  
 GEN1398R027 
 missense_variant 
 c.1256A>G 
 p.Tyr419Cys 
 Unknown 
  
  
 GEN1398R028 
 missense_variant 
 c.1271C>G 
 p.Thr424Arg 
 Unknown 
  
  
 GEN1398R029 
 missense_variant 
 c.1360G>T 
 p.Val454Phe 
 Familial 
 Paternal 
  
 GEN1398R030 
 missense_variant 
 c.1369G>C 
 p.Ala457Pro 
 De novo 
  
  
 GEN1398R031 
 missense_variant 
 c.1373T>C 
 p.Leu458Pro 
 De novo 
  
  
 GEN1398R032 
 missense_variant 
 c.1481G>C 
 p.Arg494Thr 
 Unknown 
  
  
 GEN1398R033 
 missense_variant 
 c.1525A>G 
 p.Ile509Val 
 De novo 
  
  
 GEN1398R034 
 missense_variant 
 c.1730C>T 
 p.Ala577Val 
 Familial 
 Maternal 
  
 GEN1398R035 
 missense_variant 
 c.1883C>T 
 p.Pro628Leu 
 De novo 
  
  
 GEN1398R036 
 missense_variant 
 c.1318G>C 
 p.Gly440Arg 
 De novo 
  
  
 GEN1398R037 
 missense_variant 
 c.998C>G 
 p.Leu330Val 
 De novo 
  
 Simplex 
 GEN1398R038 
 missense_variant 
 c.805A>C 
 p.Ser269Arg 
 De novo 
  
  
 GEN1398R039 
 missense_variant 
 c.1655A>G 
 p.Glu552Gly 
 De novo 
  
  
 GEN1398R040 
 missense_variant 
 c.517G>A 
 p.Val173Ile 
 Unknown 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model

No Animal Model Data Available

No PIN Data Available
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