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Relevance to Autism

33% of patients with CEP-290 isolated Leber Congenital Amaurosis ascertained by Coppieters et al., 2010, also presented with mental retardation and/or autism, in contrast to only 8% of patients with mutations in other LCA-related genes; most specifically, three patients with CEP290-related LCA and one patient with CEP290-related Senior-Loken syndrome presented with autism in this report.

Molecular Function

Part of the tectonic-like complex which is required for tissue-specific ciliogenesis and may regulate ciliary membrane composition. Required for the correct localization of ciliary and phototransduction proteins in retinal photoreceptor cells; may play a role in ciliary transport processes. Defects in this gene are associated with several diseases, including Joubert syndrome 5 (JBTS5) [MIM:610188], Senior-Loken syndrome 6 (SLSN6) [MIM:610189], Leber congenital amaurosis 10 (LCA10) [MIM:611755], Meckel syndrome 4 (MKS4) [MIM:611134], and Bardet-Biedl syndrome 14 (BBS14) [MIM:209900].

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genetic screening of LCA in Belgium: predominance of CEP290 and identification of potential modifier alleles in AHI1 of CEP290-related phenotypes.
Retinal dystrophy, blindness
ASD, ID
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
DD
Support
Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders.
Joubert syndrome
ID, hypotonia
Support
ASD
ADHD, epilepsy/seizures
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Cognitive impairment
Support
Exome sequencing of extended families with autism reveals genes shared across neurodevelopmental and neuropsychiatric disorders.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Familial intellectual disability in an Iranian family with a novel truncating mutation in CEP290.
ID
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD, ID
Recent Recommendation
A rare human CEP290 variant disrupts the molecular integrity of the primary cilium and impairs Sonic Hedgehog machinery.
ASD
Recent Recommendation
A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN583R001a 
 stop_gained 
 c.322C>T 
 p.Arg108Ter 
  
  
  
 GEN583R001b 
 stop_gained 
 c.2991+1655A>G 
  
  
  
  
 GEN583R002a 
 frameshift_variant 
 c.5519_5537del 
 p.Lys1840ArgfsTer5 
  
  
  
 GEN583R002b 
 stop_gained 
 c.2991+1655A>G 
  
  
  
  
 GEN583R003a 
 splice_site_variant 
 c.1189+1G>A 
  
  
  
  
 GEN583R003b 
 stop_gained 
 c.2991+1655A>G 
  
  
  
  
 GEN583R004a 
 stop_gained 
 c.4723A>T 
 p.Lys1575Ter 
  
  
  
 GEN583R004b 
 stop_gained 
 c.4393C>T 
 p.Arg1465Ter 
  
  
  
 GEN583R005a 
 frameshift_variant 
 c.5666del 
 p.Glu1889GlyfsTer7 
 Familial 
 Both parents 
 Multiplex 
 GEN583R006 
 missense_variant 
 c.5237G>A 
 p.Arg1746Gln 
 Familial 
  
 Extended multiplex (at least one pair of ASD affec 
 GEN583R007 
 missense_variant 
 c.1991A>G 
 p.Asp664Gly 
 Familial 
  
 Extended multiplex (at least one pair of ASD affec 
 GEN583R008a 
 missense_variant 
 c.1079G>A 
 p.Arg360Gln 
 Familial 
 Maternal 
 Simplex 
 GEN583R008b 
 missense_variant 
 c.2119C>T 
 p.Gln707Ter 
 Familial 
 Paternal 
 Simplex 
 GEN583R009a 
 stop_gained 
 c.5668G>T 
 p.Gly1890Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN583R010 
 frameshift_variant 
 c.5271_5272insT 
 p.Ala1758CysfsTer3 
 Familial 
 Paternal 
 Multiplex 
 GEN583R011 
 frameshift_variant 
 c.3411dup 
 p.Ile1138AspfsTer8 
 Familial 
 Paternal 
 Multiplex 
 GEN583R012 
 frameshift_variant 
 c.1833del 
 p.Leu612PhefsTer5 
 Familial 
 Paternal 
 Multiplex 
 GEN583R013a 
 stop_gained 
 c.5668G>T 
 p.Gly1890Ter 
 Familial 
 Both parents 
 Simplex 
 GEN583R014 
 missense_variant 
 c.830A>G 
 p.Glu277Gly 
 Unknown 
  
  
 GEN583R015 
 missense_variant 
 c.6835T>A 
 p.Leu2279Ile 
 De novo 
  
  
 GEN583R016 
 stop_gained 
 c.7048C>T 
 p.Gln2350Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN583R017 
 stop_gained 
 c.5668G>T 
 p.Gly1890Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN583R018 
 missense_variant 
 c.1834C>T 
 p.Leu612Phe 
 Unknown 
  
  
  et al.  
 GEN583R019a 
 stop_gained 
 c.5668G>T 
 p.Gly1890Ter 
 Familial 
 Both parents 
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 2
 
12
Deletion-Duplication
 6
 
12
Deletion
 1
 

Model Summary

Overexpression of BBS7 rescues head size and neuroanatomical defects of kctd13 morphants.

References

Type
Title
Author, Year
Primary
A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.

Z_CEP290_1_SBMO_KD

Model Type: Genetic
Model Genotype: Wild type
Mutation: 6ng splice-blocking MOs against cep290 were injected into wild-type zebrafish embryos at the 1- to 2-cell stage.
Allele Type: Loss of Function
Strain of Origin: Not specified
Genetic Background: Not specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: 25937446

Z_CEP290_1_SBMO_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Brain size1
Decreased
Description: Cep290 morpholino injected embryos show reduced head size compared to controls.
 Microscopic analysis
 4.5 dpf
Neuronal number1
Decreased
Description: Injection of cep290 morpholino alone reduced bilateral HuC/D expression compared to controls.
Exp Paradigm: Injected embryos were stained with HuC/D antibody. Anti-HuC/D is a marker for post- mitotic neurons, i.e., cells positive for HuC and HuD (also known as ELAVL3 and ELAVL4).
 Immunostaining
 2 dpf
Neuronal number1
Increased
Description: Injection of cep290 morpholino alone increased ectopic HuC/D expression compared to controls.
Exp Paradigm: Injected embryos were stained with HuC/D antibody. Anti-HuC/D is a marker for post- mitotic neurons, i.e., cells positive for HuC and HuD (also known as ELAVL3 and ELAVL4).
 Immunostaining
 2 dpf
Neuronal number1
Increased
Description: Cep290 morpholino injection increased unilateral HuC/D expression compared to controls.
Exp Paradigm: Injected embryos were stained with HuC/D antibody. Anti-HuC/D is a marker for post- mitotic neurons, i.e., cells positive for HuC and HuD (also known as ELAVL3 and ELAVL4).
 Immunostaining
 2 dpf
Neuronal number1
 No change
 Immunostaining
 2 dpf
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

 

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