A complex de novo chromosomal rearrangement disrupting the CELF4 gene was identified in a male patient with borderline IQ, developmental and behavioral disorders (inlcuding autistic behavior), myopia, obesity, and febrile seizures in childhood (Halgren et al., 2012). Two de novo loss-of-function (LoF) variants in this gene have been identified in ASD probands (Krumm et al., 2015; Lim et al., 2017). A familial 18q12.2 deletion with a distal breakpoint within intron 2 of the CELF4 gene was identified in a 7-year-old female proband diagnosed with autism and syndromic intellectual disability and her mother, who presented with intellectual disability and autistic behavior (Barone et al., 2017).
Molecular Function
RNA-binding protein implicated in the regulation of pre-mRNA alternative splicing. Mediates exon inclusion and/or exclusion in pre-mRNA that are subject to tissue-specific and developmentally regulated alternative splicing. When expressed ubiquitously, CELF4 is strongly expressed in the cerebellum, hippocampus, amygdala, temporal and frontal cortex and frontal lobes.
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References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Haploinsufficiency of CELF4 at 18q12.2 is associated with developmental and behavioral disorders, seizures, eye manifestations, and obesity.
Gene Name: CUGBP, Elav-like family member 4
Aliases: CELF-4; CUG-BP- and ETR-3-like factor 4; CUGBP Elav-like family member 4; RNA-binding protein BRUNOL-4; bruno-like 4, RNA binding protein; bruno-like protein 4
Human Ortholog: CELF4
Summary Statistics:
# of Reports: 2
# of Models: 7
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Celf4 gene KO with deletion of 444 bp, downstream of exon 1, using EIIA-cre in preimplantation embryos
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: B6.FVB-Tg(EIIa-cre)C5379Lmgd/J
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Celf4 gene KO with deletion of 444 bp, downstream of exon1, using Meox-cre in the embryo
Allele Type: Knockout
Strain of Origin: Not specified
Genetic Background: B6.129S4-Meox2tm1(cre)Sor/J
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Conditional deletion of 444 bp, downstream of exon 1 of Celf4 using ER-cre activated by tamoxifen in 7 week old mice
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: B6.Cg-Tg(CAG-cre/Esr1*)5Amc/J
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Conditional deletion of 444 bp, downstream of exon 1 of Celf4 using Emx1-cre, in neurons and glia of the neocortex, hippocampus and pallium, E10.5 onwards
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: B6.129S2-Emx1tm1(cre)Krj/J
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Conditional deletion of 444 bp, downstream of exon 1 of Celf4 using CamkII-cre, in excitatory neurons of the forebrain
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: B6.Cg-Tg(Camk2a-cre)1Lfr/Mmcd
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Conditional deletion of 444 bp, downstream of exon 1 of Celf4 using Pvalb-cre, in all parvalbumin expressing interneurons
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: B6;129P2-Pvalbtm1(cre)Arbr/J
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Conditional deletion of 444 bp, downstream of exon 1 of Celf4 using Viaat-cre, in gabaergic neurons that express Viaat- a GABA vesicular transporter
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: FVB-Tg(Slc32a1-cre)/Frk
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
Description: Increased excitatory synaptic transmission indicated by higher frequency and amplitude of mepsc
Exp Paradigm: Whole cell patch clamp analysis at reverse potential of gabaergic channels in cortical layer v pyramidal neurons in the presence of tetrodotoxin
Description: The non-nuclear VGAT+Gphn+ overlapping area, which marks GABAergic synapses, was significantly increased in male mutant mice.
Exp Paradigm: VGAT, Gphn
Description: The non-nuclear VGAT+Gphn+ overlapping area, which marks GABAergic synapses, was significantly decreased in female mutant mice.
Exp Paradigm: VGAT, Gphn
Description: The vGlut2+ PSD95+ overlapping area, which labels glutamatergic synapses, was significantly increased in the subplate of male mutant mice.
Exp Paradigm: VGlut1, VGlut2, PSD95
Description: To confirm whether transcripts identified in the polysome profiling-RNA seq analysis are subjected to translational regulation, relative mRNA levels (polysome/monosome ratio) were measured via qRT-PCR on previously sequenced sucrose gradient fractions. Several synaptic mRNAs (Homer2, Sema4c, Ank2, Srcin1), including Celf4 targets (Map1b, Ppp1r9a, Sv2a, Syp, and Slc17a7/vGlut1) had a significantly greater polysome/monosome ratio, suggesting their distribution is shifted to polysomal fractions in conditional knockouts. The mRNA level of Celf4 target Eif4a2 was strongly decreased in polysome/monosome ratio, implying that Eif4a2 mRNA is predominantly associated with monosomes when Celf4 is knocked out.
Description: Isoform-level differential expression analysis of monosome and polysome fractions reveals 729 isoform mRNAs with differences in association with monosome, 239 isoform mRNAs predominantly associated only with translating polysomes, and 89 isoforms with changes in association with both monosomes and polysomes. In isoform mRNAs with differential association with polysomes, 145 and 183 mRNA isoforms were translationally derepressed and repressed, respectively.
Description: Eif4a2 protein expression was evidently reduced while the Sv2a protein punctate staining was increased in the subplate of Celf4 mutants. Protein expression from Syp mRNAs was also increased in the subplate of the Celf4 conditional knockout mouse neocortex.
Exp Paradigm: Eif4a2, Sv2a, Syp