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Relevance to Autism

A rare de novo missense variant in the CDK19 gene was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014, while a de novo nonsense variant in this gene was observed in an ASD proband from the Autism Sequencing Consortium in Satterstrom et al., 2020. De novo missense variants in the CDK19 gene have been shown to cause a form of developmental and epileptic encephalopathy (DEE87; OMIM 618916); autism have been observed in a subset of affected individuals (Chung et al., 2020; Zarate et al., 2021). Furthermore, several recurrent CDK19 missense variants described in Chung et al., 2020 and Zarate et al., 2021 (p.Gly28Arg, p.Tyr32His, and p.Thr196Ala) were shown to exhibit significant functional effects in in vivo model systems.

Molecular Function

This gene encodes a protein that is one of the components of the Mediator co-activator complex. The Mediator complex is a multi-protein complex required for transcriptional activation by DNA binding transcription factors of genes transcribed by RNA polymerase II. The protein encoded by this gene is similar to cyclin-dependent kinase 8 which can also be a component of the Mediator complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
A novel variant of CDK19 causes a severe neurodevelopmental disorder with infantile spasms
DD, epilepsy/seizures
Support
De Novo Variants in CDK19 Are Associated with a Syndrome Involving Intellectual Disability and Epileptic Encephalopathy
Developmental and epileptic encephalopathy-87, DD,
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent recommendation
CDK19-related disorder results from both loss-of-function and gain-of-function de novo missense variants
Developmental and epileptic encephalopathy-87, DD,
ASD or autistic features, stereotypy

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1233R001 
 missense_variant 
 c.1175C>G 
 p.Pro392Arg 
 De novo 
  
 Simplex 
 GEN1233R002 
 stop_gained 
 c.863_864insGCCTCATAAAGTACA 
 p.Tyr288delinsTer 
 De novo 
  
  
 GEN1233R003 
 missense_variant 
 c.586A>G 
 p.Thr196Ala 
 De novo 
  
 Simplex 
 GEN1233R004 
 missense_variant 
 c.586A>G 
 p.Thr196Ala 
 De novo 
  
 Simplex 
 GEN1233R005 
 missense_variant 
 c.94T>C 
 p.Tyr32His 
 De novo 
  
 Simplex 
 GEN1233R006 
 missense_variant 
 c.82G>C 
 p.Gly28Arg 
 De novo 
  
 Simplex 
 GEN1233R007 
 missense_variant 
 c.82G>C 
 p.Gly28Arg 
 De novo 
  
 Simplex 
 GEN1233R008 
 missense_variant 
 c.82G>A 
 p.Gly28Arg 
 De novo 
  
 Simplex 
 GEN1233R009 
 missense_variant 
 c.82G>A 
 p.Gly28Arg 
 De novo 
  
 Simplex 
 GEN1233R010 
 missense_variant 
 c.83G>C 
 p.Gly28Ala 
 De novo 
  
 Simplex 
 GEN1233R011 
 missense_variant 
 c.94T>C 
 p.Tyr32His 
 De novo 
  
 Simplex 
 GEN1233R012 
 missense_variant 
 c.94T>C 
 p.Tyr32His 
 De novo 
  
 Simplex 
 GEN1233R013 
 missense_variant 
 c.95A>G 
 p.Tyr32Cys 
 De novo 
  
 Simplex 
 GEN1233R014 
 missense_variant 
 c.589T>C 
 p.Phe197Leu 
 De novo 
  
 Simplex 
 GEN1233R015 
 missense_variant 
 c.594G>C 
 p.Trp198Cys 
 De novo 
  
 Simplex 
 GEN1233R016 
 missense_variant 
 c.598C>T 
 p.Arg200Trp 
 De novo 
  
  
 GEN1233R017 
 missense_variant 
 c.92C>A 
 p.Thr31Asn 
 De novo 
  
  
 GEN1233R018 
 inframe_deletion 
 c.168_173del 
 p.Thr57_Gly58del 
 De novo 
  
  
 GEN1233R019 
 stop_gained 
 c.838C>T 
 p.Gln280Ter 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 1
 
6
Deletion-Duplication
 23
 
6
Deletion
 1
 

No Animal Model Data Available

 

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