Summary Statistics:
ASD Reports: 21
Recent Reports: 2
Annotated variants: 101
Associated CNVs: 5
Evidence score: 4
Gene Score: S
Relevance to Autism
Heterozygous mutations in the CDK13 gene are associated with congenital heart defects, dysmorphic facial features, and intellectual developmental disorder (CHDFIDD; OMIM 617360) (Sifrim et al., 2016; Bostwick et al., 2017). Phenotypic characterization of 16 individuals with heterozygous CDK13 variants in Hamilton et al., 2017 demonstrated that, in addition to previously identified phenotypes such as developmental delay, structural cardiac anomalies, and dysmorphic features, six patients had a diagnosis of autism spectrum disorder, while an additional two patients displayed autistic traits or stereotypies. A de novo missense variant that was predicted to be damaging was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014.
Molecular Function
The protein encoded by this gene is a member of the cyclin-dependent serine/threonine protein kinase family. Cyclin-dependent kinase which displays CTD kinase activity and is required for RNA splicing. Has CTD kinase activity by hyperphosphorylating the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit RPB1, thereby acting as a key regulator of transcription elongation. Required for RNA splicing, probably by phosphorylating SRSF1/SF2.
References
Primary
Heterozygous mutations affecting the protein kinase domain of CDK13 cause a syndromic form of developmental delay and intellectual disability.
Congenital heart defects, dysmorphic facial featur
ASD
Support
Phenotypic and molecular characterisation of CDK13-related congenital heart defects, dysmorphic facial features and intellectual developmental diso...
Congenital heart defects, dysmorphic facial featur
Support
Severe childhood speech disorder: Gene discovery highlights transcriptional dysregulation
Childhood apraxia of speech
DD
Support
Distinct genetic architectures for syndromic and nonsyndromic congenital heart defects identified by exome sequencing.
Congenital heart defects, dysmorphic facial featur
Support
Excess of de novo variants in genes involved in chromatin remodelling in patients with marfanoid habitus and intellectual disability
ID
Marfanoid habitus
Support
The utility of DNA methylation signatures in directing genome sequencing workflow: Kabuki syndrome and CDK13-related disorder
DD
Support
Structural and Functional Analysis of the Cdk13/Cyclin K Complex.
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genetic of preimplantation diagnosis of dysmorphic facial features and intellectual developmental disorder (CHDFIDD) without congenital heart defects
DD, ID
Autistic features
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Variantrecurrence in neurodevelopmental disorders: the use of publicly available genomic data identifies clinically relevant pathogenic missense v...
DD
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ASD, DD, ID, epilepsy/seizures
Support
De novo variants in CDK13 associated with syndromic ID/DD; molecular and clinical delineation of 15 individuals and a further review.
DD, ID
ASD, ADHD
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Support
Redefining the phenotypic spectrum of de novo heterozygous CDK13 variants: Three patients without cardiac defects.
DD, ID
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Recent Recommendation
Craniosynostosis
ASD
Recent Recommendation
DD
ASD, ADHD, ID
GEN982R001
missense_variant
c.2140G>C
p.Gly714Arg
De novo
GEN982R002
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R003
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R004
missense_variant
c.2156T>G
p.Val719Gly
De novo
GEN982R005
missense_variant
c.2201A>G
p.Lys734Arg
De novo
GEN982R006
missense_variant
c.2252G>A
p.Arg751Gln
De novo
GEN982R007
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R008
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R009
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R010
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R011
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R012
missense_variant
c.2524A>G
p.Asn842Asp
De novo
GEN982R013
missense_variant
c.2579G>A
p.Arg860Gln
De novo
Multiplex
GEN982R014
missense_variant
c.2620G>T
p.Val874Leu
De novo
GEN982R015
missense_variant
c.2686G>A
p.Asp896Asn
De novo
GEN982R016
splice_site_variant
c.2898-1G>A
De novo
GEN982R017
missense_variant
c.2375A>T
p.Glu792Val
De novo
Simplex
GEN982R018
missense_variant
c.2524A>G
p.Asn842Asp
De novo
GEN982R019
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R020
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R021
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R022
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R023
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R024
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R025
missense_variant
c.2200A>G
p.Lys734Glu
De novo
GEN982R026
missense_variant
c.2525A>G
p.Asn842Ser
Unknown
GEN982R027
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R028
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R029
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R030
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R031
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R032
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R033
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R034
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R035
missense_variant
c.2141G>A
p.Gly714Asp
De novo
GEN982R036
missense_variant
c.2209C>T
p.Arg737Cys
De novo
GEN982R037
missense_variant
c.2638C>T
p.Arg880Cys
De novo
GEN982R038
splice_site_variant
c.2600+4940A>G
De novo
Multiplex (monozygotic twins)
GEN982R039
frameshift_variant
c.484dup
p.Ala162GlyfsTer108
De novo
GEN982R040
frameshift_variant
c.484dup
p.Ala162GlyfsTer108
De novo
GEN982R041
frameshift_variant
c.484dup
p.Ala162GlyfsTer108
Unknown
GEN982R042
stop_gained
c.2995C>T
p.Arg999Ter
De novo
GEN982R043
stop_gained
c.3073C>T
p.Arg1025Ter
De novo
GEN982R044
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R045
stop_gained
c.3400G>T
p.Gly1134Ter
Familial
Paternal
Multiplex
GEN982R046
missense_variant
c.2525A>G
p.Asn842Ser
De novo
Simplex
GEN982R047
stop_gained
c.2995C>T
p.Arg999Ter
De novo
GEN982R048
stop_gained
c.2578C>T
p.Arg860Ter
Familial
Paternal
GEN982R049
missense_variant
c.2080G>T
p.Asp694Tyr
Unknown
GEN982R050
missense_variant
c.2669G>A
p.Arg890Gln
Unknown
GEN982R051
missense_variant
c.2669G>A
p.Arg890Gln
Unknown
GEN982R052
frameshift_variant
c.2322_2325del
p.Glu775MetfsTer23
Unknown
GEN982R053
frameshift_variant
c.2751del
p.Gln918ArgfsTer6
Unknown
GEN982R054
frameshift_variant
c.4156_4157insTA
p.His1386LeufsTer20
Unknown
GEN982R055
missense_variant
c.1928G>A
p.Arg643Gln
Unknown
GEN982R056
missense_variant
c.2149G>A
p.Gly717Arg
Unknown
GEN982R057
missense_variant
c.2620G>T
p.Val874Leu
Unknown
GEN982R058
missense_variant
c.2638C>A
p.Arg880Ser
Unknown
GEN982R059
missense_variant
c.2638C>A
p.Arg880Ser
Unknown
GEN982R060
stop_gained
c.1876C>T
p.Arg626Ter
De novo
Simplex
GEN982R061
missense_variant
c.2671T>C
p.Tyr891His
De novo
Simplex
GEN982R062
missense_variant
c.2609A>G
p.Tyr870Cys
De novo
Simplex
GEN982R063
missense_variant
c.2201A>C
p.Lys734Thr
De novo
Simplex
GEN982R064
missense_variant
c.2149G>A
p.Gly717Arg
Familial
Maternal
Simplex
GEN982R065
missense_variant
c.2149G>A
p.Gly717Arg
De novo
Simplex
GEN982R066
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R067
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R068
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R069
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R070
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R071
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R072
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R073
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R074
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R075
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R076
missense_variant
c.2525A>G
p.Asn842Ser
Unknown
GEN982R077
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R078
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R079
missense_variant
c.2525A>G
p.Asn842Ser
De novo
GEN982R080
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R081
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R082
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R083
missense_variant
c.2149G>A
p.Gly717Arg
De novo
GEN982R084
missense_variant
c.2140G>T
p.Gly714Cys
De novo
GEN982R085
missense_variant
c.2638C>T
p.Arg880Cys
De novo
GEN982R086
missense_variant
c.2638C>T
p.Arg880Cys
De novo
GEN982R087
missense_variant
c.2579G>A
p.Arg860Gln
De novo
GEN982R088
missense_variant
c.478G>C
p.Gly160Arg
Unknown
GEN982R089
missense_variant
c.2201A>G
p.Lys734Arg
De novo
GEN982R090
missense_variant
c.2511T>G
p.Asp837Glu
De novo
GEN982R091
missense_variant
c.2263A>T
p.Ile755Phe
De novo
GEN982R092
missense_variant
c.2956C>T
p.Arg986Cys
De novo
GEN982R093
missense_variant
c.2519G>A
p.Cys840Tyr
De novo
GEN982R094
missense_variant
c.2563G>C
p.Asp855His
De novo
GEN982R095
splice_site_variant
c.3688+1G>A
De novo
GEN982R096
stop_gained
c.1630C>T
p.Gln544Ter
De novo
GEN982R097
frameshift_variant
c.484dup
p.Ala162GlyfsTer108
De novo
GEN982R098
frameshift_variant
c.336del
p.Gln113ArgfsTer28
De novo
GEN982R099
missense_variant
c.2638C>T
p.Arg880Cys
De novo
GEN982R100
missense_variant
c.2602C>T
p.Arg868Trp
De novo
GEN982R101
missense_variant
c.2572C>G
p.Leu858Val
De novo
Simplex
No Common Variants Available
7
Deletion-Duplication
22
No Animal Model Data Available
No Interactions Available