Summary Statistics:
ASD Reports: 32
Recent Reports: 2
Annotated variants: 49
Associated CNVs: 10
Evidence score: 3
Gene Score: 4
Relevance to Autism
A likely damaging missense variant in the CASK gene was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014. A de novo possibly damaging missense variant in CASK was identified in a female proband from the Deciphering Developmental Disorders (DDD) study presenting with autism, ADHD, developmental delay, and hypotonia (PMID 25533962). Mutations in this gene are associated with FG syndrome 4 (OMIM 300422) and mental retardation and microcephaly with pontine and cerebellar hypoplasia (OMIM 300749). CASK interacts with the high confidence ASD gene TBR1 (Hsueh et al., 2000).
Molecular Function
This gene encodes a calcium/calmodulin-dependent serine protein kinase. The encoded protein is a MAGUK (membrane-associated guanylate kinase) protein family member. These proteins are scaffold proteins and the encoded protein is located at synapses in the brain. Mutations in this gene are associated with FG syndrome 4 (OMIM 300422) and mental retardation and microcephaly with pontine and cerebellar hypoplasia (OMIM 300749).
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Next-generation gene panel testing in adolescents and adults in a medical neuropsychiatric genetics clinic
ID
Support
CASK mutations are frequent in males and cause X-linked nystagmus and variable XLMR phenotypes.
ID
Nystagmus
Support
Clinical Utility of Proband Only Clinical Exome Sequencing in Neurodevelopmental Disorders
DD
Support
Two microcephaly-associated novel missense mutations in CASK specifically disrupt the CASK-neurexin interaction.
Mental retardation and microcephaly with pontine a
DD, microcephaly
Support
Presynaptic dysfunction in CASK-related neurodevelopmental disorders
Mental retardation and microcephaly with pontine a
ADHD, ID, epilepsy/seizures
Support
A missense mutation in CASK causes FG syndrome in an Italian family.
FG syndrome 4
Support
Exome Pool-Seq in neurodevelopmental disorders.
ID
Microcephaly
Support
Patient-Derived Variants Define Constraints for Ligand Binding at the PDZ Domain of CASK
ASD, ADHD, DD, ID
Support
Survival of a male patient harboring CASK Arg27Ter mutation to adolescence
Mental retardation and microcephaly with pontine a
DD, ID, epilepsy/seizures
Support
Mutations of CASK cause an X-linked brain malformation phenotype with microcephaly and hypoplasia of the brainstem and cerebellum.
Mental retardation and microcephaly with pontine a
Support
DD, epilepsy/seizures
Support
A novel CASK mutation identified in siblings exhibiting developmental disorders with/without microcephaly.
ASD, DD
Microcephaly
Support
Genetic variants and phenotypic data curated for the CAGI6 intellectual disability panel challenge
ID
Support
Targeted Next-Generation Sequencing in Patients with Suggestive X-Linked Intellectual Disability.
ID
Support
Transcriptional modification by a CASK-interacting nucleosome assembly protein.
Support
CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons
Support
Comprehensive investigation of CASK mutations and other genetic etiologies in 41 patients with intellectual disability and microcephaly with pontin...
Mental retardation and microcephaly with pontine a
Support
The impact of inversions across 33,924 families with rare disease from a national genome sequencing project
DD, ID
Support
Characterization of intellectual disability and autism comorbidity through gene panel sequencing.
ID, ASD or autistic traits
Support
Nuclear translocation and transcription regulation by the membrane-associated guanylate kinase CASK/LIN-2.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Calcium/calmodulin-dependent serine protein kinase (CASK), a protein implicated in mental retardation and autism-spectrum disorders, interacts with...
Support
The utility of exome sequencing in diagnosing pediatric neurodevelopmental disorders in a highly consanguineous population
ASD, DD
Support
The Clinical and Genetic Features of Co-occurring Epilepsy and Autism Spectrum Disorder in Chinese Children.
ASD, epilepsy/seizures
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD, ID
ASD
Support
Yield of exome sequencing in patients with developmental and epileptic encephalopathies and inconclusive targeted gene panel
DD, ID, epilepsy/seizures
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ID, motor delay, speech delay
Microcephaly
Recent Recommendation
Craniosynostosis
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
GEN876R001
missense_variant
c.589G>A
p.Gly197Arg
De novo
Simplex
GEN876R002
splice_site_variant
c.831+1G>A
De novo
GEN876R003
stop_gained
ENST00000378168:c.10C>T
p.Arg4Ter
De novo
Simplex
GEN876R004
missense_variant
ENST00000378168:c.239C>T
p.Pro80Leu
De novo
Simplex
GEN876R005
missense_variant
c.763C>T
p.Arg255Cys
De novo
Simplex
GEN876R006
stop_gained
c.1768C>T
p.Pro590Ser
Familial
Maternal
Simplex
GEN876R007
inversion
Unknown
GEN876R008
copy_number_loss
De novo
GEN876R009
copy_number_loss
GEN876R010
stop_gained
c.1915C>T
p.Arg639Ter
De novo
GEN876R011
splice_site_variant
c.915G>A
p.Lys305=
Unknown
Not maternal
GEN876R012
missense_variant
c.83G>T
p.Arg28Leu
Familial
Maternal
GEN876R013
missense_variant
c.802T>C
p.Tyr268His
Familial
Maternal
Multi-generational
GEN876R014
missense_variant
c.1186C>T
p.Pro396Ser
Familial
Maternal
Extended multiplex
GEN876R015
missense_variant
c.2129A>G
p.Asp710Gly
Familial
Maternal
Extended multiplex
GEN876R016
missense_variant
c.2755T>C
p.Trp919Arg
Familial
Maternal
Multiplex
GEN876R017
missense_variant
c.2183A>G
p.Lys728Arg
Familial
Maternal
Multiplex
GEN876R018
splice_site_variant
c.2521-2A>T
p.?
Familial
Maternal
Multiplex
GEN876R019
missense_variant
c.1424G>T
p.Ser475Ile
Familial
Maternal
Multiplex
GEN876R020
frameshift_variant
c.68del
p.Phe23SerfsTer18
De novo
GEN876R021
missense_variant
c.1556T>C
p.Met519Thr
Unknown
Not maternal
Simplex
GEN876R022
missense_variant
c.1556T>C
p.Met519Thr
Unknown
GEN876R023
missense_variant
c.1976G>A
p.Gly659Asp
De novo
GEN876R024
missense_variant
c.1922G>A
p.Arg641Lys
Familial
Maternal
GEN876R025
missense_variant
c.1159T>C
p.Tyr387His
De novo
GEN876R026
stop_gained
c.2119C>T
p.Gln707Ter
De novo
GEN876R027
frameshift_variant
c.1214_1215del
p.Ala405GlyfsTer16
De novo
Multiplex
GEN876R028
missense_variant
c.490G>A
p.Gly164Arg
Familial
Maternal
Unknown
GEN876R029
stop_gained
c.79C>T
p.Arg27Ter
De novo
Simplex
GEN876R030
splice_site_variant
c.1314+1G>T
Familial
Maternal
Multiplex
GEN876R031
copy_number_gain
De novo
Simplex
GEN876R032
missense_variant
c.1610G>A
p.Arg537Gln
Unknown
GEN876R033
frameshift_variant
c.1623_1626del
p.Ile542ValfsTer52
De novo
Simplex
GEN876R034
frameshift_variant
c.1682_1694del
p.Gly561AlafsTer53
De novo
GEN876R035
missense_variant
c.589G>A
p.Gly197Arg
De novo
GEN876R036
stop_gained
c.79C>T
p.Arg27Ter
De novo
GEN876R037
stop_gained
c.725G>A
p.Trp242Ter
De novo
GEN876R038
copy_number_loss
Unknown
Simplex
GEN876R039
missense_variant
c.1610G>A
p.Arg537Gln
Unknown
Simplex
GEN876R040
copy_number_loss
Unknown
Simplex
GEN876R041
missense_variant
c.427A>G
p.Lys143Glu
Unknown
Simplex
GEN876R042
inversion
Unknown
Simplex
GEN876R043
missense_variant
c.1223G>A
p.Arg408Lys
Unknown
GEN876R044
missense_variant
c.793A>T
p.Ile265Phe
De novo
GEN876R045
missense_variant
c.1394C>G
p.Ser465Cys
Unknown
GEN876R046
inversion
De novo
Simplex
GEN876R047
missense_variant
c.44G>A
p.Cys15Tyr
Familial
Maternal
Unknown
GEN876R048
missense_variant
c.2640C>A
p.Asp880Glu
Familial
Maternal
Unknown
GEN876R049
missense_variant
c.2014A>G
p.Ile672Val
Familial
Maternal
No Common Variants Available
X
Deletion-Duplication
32
X
Deletion-Duplication
22
No Animal Model Data Available
No Interactions Available