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Relevance to Autism

Two rare and potentially damaging de novo missense variants in the CAMTA2 gene have been identified in ASD probands from the SPARK cohort (Zhou et al., 2022), while three protein-truncating variants in this gene were observed in ASD probands, compared to none in controls, from a case-control cohort (Trost et al., 2022). Transmission and de novo association (TADA) analysis of whole-exome and whole-genome sequencing data from the Autism Sequencing Consortium, the Simons Simplex Collection, the MSSNG cohort, and the SPARK cohort in Trost et al., 2022 identified CAMTA2 as an ASD-associated gene with a false discovery rate (FDR) < 0.1.

Molecular Function

The protein encoded by this gene is a member of the calmodulin-binding transcription activator protein family. Members of this family share a common domain structure that consists of a transcription activation domain, a DNA-binding domain, and a calmodulin-binding domain. A homozygous 5'UTR variant that was 6 bases upstream of the translation start site of the CAMTA2 gene was found to segregate with disease in a consanguineous extended family with five affected individuals presenting with syndromic tremulous dystonia, spasticity, and white matter disease; transfection of wild type and mutant 5'UTR-linked fluorescent reporters showed a significant reduction in the protein fluorescent activity, implying translation inhibition (Monies et al., 2017).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Integrating de novo and inherited variants in 42
ASD
Support
Identification of a novel genetic locus underlying tremor and dystonia
Syndromic tremulous dystonia, spasticity, and whit
Recent Recommendation
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1373R001 
 missense_variant 
 c.3362A>G 
 p.Tyr1121Cys 
 De novo 
  
  
 GEN1373R002 
 missense_variant 
 c.3263G>A 
 p.Arg1088Gln 
 De novo 
  
  
 GEN1373R003 
 synonymous_variant 
 c.1764C>T 
 p.Ser588%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Deletion-Duplication
 20
 
17
Duplication
 1
 
17
Duplication
 3
 
17
Deletion-Duplication
 5
 
17
Duplication
 9
 
17
Duplication
 1
 
17
Duplication
 1
 

No Animal Model Data Available

 

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