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Relevance to Autism

CAD was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to four ASD probands in four independent families. A de novo missense variant in this gene had previously been identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014). Biallelic variants in CAD have previously been shown to be associated with developmental and epileptic encephalopathy-50 (DEE50; OMIM 616457), an autosomal recessive progressive neurodegenerative neurometabolic disorder characterized by delayed psychomotor development, early-onset refractory seizures, severe developmental regression, and normocytic anemia (Ng et al., 2015; Koch et al., 2017).

Molecular Function

The de novo synthesis of pyrimidine nucleotides is required for mammalian cells to proliferate. This gene encodes a trifunctional protein which is associated with the enzymatic activities of the first 3 enzymes in the 6-step pathway of pyrimidine biosynthesis: carbamoylphosphate synthetase (CPS II), aspartate transcarbamoylase, and dihydroorotase. This protein is regulated by the mitogen-activated protein kinase (MAPK) cascade, which indicates a direct link between activation of the MAPK cascade and de novo biosynthesis of pyrimidine nucleotides.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
CAD mutations and uridine-responsive epileptic encephalopathy
Developmental and epileptic encephalopathy-50
Support
Biallelic mutations in CAD, impair de novo pyrimidine biosynthesis and decrease glycosylation precursors
Developmental and epileptic encephalopathy-50
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1269R001 
 frameshift_variant 
 c.3512dup 
 p.Gln1172ThrfsTer37 
 Familial 
  
 Simplex 
 GEN1269R002 
 frameshift_variant 
 c.5296_5308del 
 p.Phe1766ThrfsTer10 
 Familial 
  
 Simplex 
 GEN1269R003 
 stop_gained 
 c.3358G>T 
 p.Glu1120Ter 
 Familial 
  
 Simplex 
 GEN1269R004 
 frameshift_variant 
 c.2165_2166del 
 p.Val722AspfsTer8 
 Familial 
  
 Simplex 
 GEN1269R005 
 missense_variant 
 c.716T>C 
 p.Val239Ala 
 De novo 
  
 Simplex 
 GEN1269R006 
 synonymous_variant 
 c.4785C>T 
 p.Thr1595%3D 
 Unknown 
  
  
 GEN1269R007 
 missense_variant 
 c.2671C>T 
 p.Arg891Cys 
 De novo 
  
  
 GEN1269R008 
 synonymous_variant 
 c.2718T>G 
 p.Val906%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion
 13
 
2
Duplication
 1
 
2
Duplication
 1
 

No Animal Model Data Available

 

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