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Relevance to Autism

Genome-wide investigation of tandem repeats in 17,231 genomes of families with autism from the Autism Speaks MSSNG project and the Simons Simplex Collection in Trost et al., 2020 identified a rare tandem repeat expansion in the CACNB1 gene (chr17:39182673-39183931 (AAGGAGGAG;AAGAAGGAG)) in seven unrelated ASD probands. This tandem repeat in CACNB1 was observed in more than 0.1% of ASD-affected individuals in this cohort and had a frequency less than 0.1% in unaffected siblings, 1000 Genomes, and 1,612 additional population controls from GTEx and the Mayo Clinic Biobank.

Molecular Function

The protein encoded by this gene belongs to the calcium channel beta subunit family. It plays an important role in the calcium channel by modulating G protein inhibition, increasing peak calcium current, controlling the alpha-1 subunit membrane targeting and shifting the voltage dependence of activation and inactivation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-wide detection of tandem DNA repeats that are expanded in autism
ASD
DD, ID, ADHD
Support
Inhibitory effects on L- and N-type calcium channels by a novel Ca V β 1 variant identified in a patient with autism spectrum disorder
ASD
Support
Contribution of CACNA1H Variants in Autism Spectrum Disorder Susceptibility
ASD
DD, ID, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1200R001 
 microsatellite 
  
  
 Unknown 
  
 Multiplex 
 GEN1200R002 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1200R003 
 microsatellite 
  
  
 Unknown 
  
 Unknown 
 GEN1200R004 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1200R005 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1200R006 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1200R007 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1200R008 
 missense_variant 
 c.886C>T 
 p.Arg296Cys 
 Unknown 
  
  
 GEN1200R009 
 missense_variant 
 A>T 
 p.Ile597Asn 
 Familial 
 Paternal 
 Multiplex (monozygotic twins) 
 GEN1200R010 
 missense_variant 
 c.323A>G 
 p.Asn108Ser 
 Familial 
 Paternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 

No Animal Model Data Available

 

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