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Relevance to Autism

A de novo missense variant that was predicted to be damaging (p.Arg351Thr) was observed in the CACNA2D1 gene in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014); functional characterization of this variant in Risher et al., 2018 demonstrated that CACNA2D1-p.Arg351Thr failed to rescue defects in synaptogenesis in transfected organotypic slices from Cacna2d1-knockout mice. Genomic aberrations affecting the CACNA2D1 gene had previously been observed in three unrelated patients with intellectual disability and epilepsy (Vergult et al., 2015).

Molecular Function

The preproprotein encoded by this gene is cleaved into multiple chains that comprise the alpha-2 and delta subunits of the voltage-dependent calcium channel complex. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization. Mutations in this gene can cause cardiac deficiencies, including Brugada syndrome and short QT syndrome.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Contribution of CACNA1H Variants in Autism Spectrum Disorder Susceptibility
ASD
Support
Biallelic CACNA2D1 loss-of-function variants cause early-onset developmental epileptic encephalopathy
DD, ID, epilepsy/seizures
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Massively parallel reporter assays discover de novo exonic splicing mutants in paralogs of Autism genes
ASD
Support
Genomic aberrations of the CACNA2D1 gene in three patients with epilepsy and intellectual disability.
DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Thrombospondin receptor 2-1 promotes synaptogenesis and spinogenesis via postsynaptic Rac1.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1031R001 
 missense_variant 
 c.1052G>C 
 p.Arg351Thr 
 De novo 
  
 Simplex 
 GEN1031R002 
 translocation 
  
  
 De novo 
  
 Simplex 
 GEN1031R003 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1031R004 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1031R005 
 missense_variant 
 c.2903C>A 
 p.Ser968Tyr 
 Unknown 
  
  
 GEN1031R006a 
 frameshift_variant 
 c.818_821dupGAAC 
 p.Ser275AsnfsTer13 
 Familial 
 Both parents 
  
 GEN1031R007a 
 frameshift_variant 
 c.13_23dupTGCCTGCTGGC 
 p.Leu9AlafsTer5 
 Familial 
 Maternal 
 Simplex 
 GEN1031R007b 
 missense_variant 
 c.626G>A 
 p.Gly209Asp 
 Familial 
 Paternal 
 Simplex 
 GEN1031R008 
 missense_variant 
 C>G 
 p.Asp820His 
 Familial 
 Maternal 
  
 GEN1031R009 
 frameshift_variant 
 c.832del 
 p.Glu278LysfsTer3 
 De novo 
  
 Multiplex 
 GEN1031R010 
 missense_variant 
 c.3101C>T 
 p.Ala1034Val 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Deletion
 2
 
7
Deletion
 3
 
7
Deletion-Duplication
 24
 
7
Duplication
 3
 

No Animal Model Data Available

 

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