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Relevance to Autism

De novo loss-of-function variants in the BSN gene have been identified in an ASD proband from the SPARK cohort (Trost et al., 2022) and in a Japanese ASD proband who also presented with developmental delay, intellectual disability, and epilepsy (Furukawa et al., 2025), while additional de novo missense and synonymous variants in this gene have been reported in ASD probands from the Autism Sequencing Consortium, the SPARK cohort, and the MSSNG cohort (De Rubeis et al., 2014; Yuen et al., 2017; Feliciano et al., 2019; Satterstrom et al., 2020; Zhou et al., 2022; Fu et al., 2022; Trost et al., 2022). Heterozygous and compound heterozygous variants in BSN have also been reported in individuals with epilepsy (Ye et al., 2023), and a genome-wide association study of febrile seizures in 7635 cases and 83,966 controls in Skotte et al., 2022 identified BSN as a novel loci with a P-value < 5.0E-10. Altrock et al., 2003 had previously demonstrated that mutant mice expressing a form of Bsn lacking the central exons critical for anchoring Bsn to the cytomatrix at the presynaptic active zone displayed a reduction in normal synaptic transmission that was attributable to inactivation of a significant fraction of glutamatergic synapses, an inability of vesicles at these synapses to fuse, and spontaneous epileptic seizures. More recently, Guzman et al., 2025 described 14 individuals with potentially disruptive de novo variants in the BSN gene and identified 15 additional individuals with protein-truncating variants (PTVs) from large biobanks; clinical features were standardized using the Human Phenotype Ontology (HPO) across all 29 individuals, which revealed common clinical characteristics including epilepsy (13/29, 45%), behavioral phenotypes (14/29, 48%) including ADHD (7/29, 25%) and autistic behavior (5/29, 17%), developmental delay (11/29, 38%), obesity (10/29, 34%), and delayed speech (8/29, 28%).

Molecular Function

Neurotransmitters are released from a specific site in the axon terminal called the active zone, which is composed of synaptic vesicles and a meshwork of cytoskeleton underlying the plasma membrane. The protein encoded by this gene is thought to be a scaffolding protein involved in organizing the presynaptic cytoskeleton. The gene is expressed primarily in neurons in the brain. A similar gene product in rodents is concentrated in the active zone of axon terminals and tightly associated with cytoskeletal structures, and is essential for regulating neurotransmitter release from a subset of synapses.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole-genome sequencing analysis of Japanese autism spectrum disorder trios
ASD, DD, ID, epilepsy/seizures
Positive association
Genome-wide association study of febrile seizures implicates fever response and neuronal excitability genes
Febrile seizures
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Functional inactivation of a fraction of excitatory synapses in mice deficient for the active zone protein bassoon
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Variants in BSN, encoding the presynaptic protein Bassoon, result in a distinct neurodevelopmental disorder with a broad phenotypic range
DD, epilepsy/seizures
ASD or autistic behavior, ADHD, ODD, ID, learning
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Variants in BSN gene associated with epilepsy with favourable outcome
Epilepsy/seizures
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1494R001 
 frameshift_variant 
 c.4971dupC 
 p.Arg1659GlnfsTer23 
 De novo 
  
 Simplex 
 GEN1494R002 
 missense_variant 
 c.7882C>T 
 p.Arg2628Cys 
 De novo 
  
  
 GEN1494R003 
 synonymous_variant 
 c.2301G>A 
 p.Thr767= 
 De novo 
  
 Multiplex 
 GEN1494R004 
 synonymous_variant 
 c.4257T>C 
 p.Tyr1419= 
 De novo 
  
 Simplex 
 GEN1494R005 
 missense_variant 
 c.11249G>A 
 p.Arg3750Gln 
 De novo 
  
  
 GEN1494R006 
 missense_variant 
 c.8980C>T 
 p.Arg2994Trp 
 De novo 
  
 Simplex 
 GEN1494R007 
 synonymous_variant 
 c.5919A>G 
 p.Pro1973= 
 De novo 
  
 Simplex 
 GEN1494R008 
 missense_variant 
 c.7804C>T 
 p.Arg2602Cys 
 De novo 
  
 Simplex 
 GEN1494R009 
 missense_variant 
 c.10436C>T 
 p.Ala3479Val 
 De novo 
  
 Unknown 
 GEN1494R010 
 missense_variant 
 c.11479A>C 
 p.Thr3827Pro 
 De novo 
  
  
 GEN1494R011 
 missense_variant 
 c.10615G>C 
 p.Asp3539His 
 De novo 
  
  
 GEN1494R012 
 frameshift_variant 
 c.6263dupC 
 p.Ala2088fs 
 De novo 
  
 Unknown 
 GEN1494R013 
 missense_variant 
 c.4838C>T 
 p.Pro1613Leu 
 De novo 
  
 Simplex 
 GEN1494R014 
 frameshift_variant 
 c.8158_8162delACGGA 
 p.Thr2720AlafsTer38 
 De novo 
  
  
 GEN1494R015 
 frameshift_variant 
 c.867dupG 
 p.Pro290AlafsTer27 
 De novo 
  
  
 GEN1494R016 
 stop_gained 
 c.10255C>T 
 p.Gln3419Ter 
 De novo 
  
  
 GEN1494R017 
 stop_gained 
 c.8095G>T 
 p.Glu2699Ter 
 De novo 
  
  
 GEN1494R018 
 stop_gained 
 c.7916C>G 
 p.Ser2639Ter 
 De novo 
  
  
 GEN1494R019 
 missense_variant 
 c.9499C>A 
 p.Pro3167Thr 
 De novo 
  
  
 GEN1494R020 
 missense_variant 
 c.620C>A 
 p.Pro207His 
 De novo 
  
  
 GEN1494R021 
 frameshift_variant 
 c.4138delA 
 p.Thr1380ProfsTer19 
 De novo 
  
  
 GEN1494R022 
 stop_gained 
 c.8614C>T 
 p.Gln2872Ter 
 De novo 
  
  
 GEN1494R023 
 stop_gained 
 c.8614C>T 
 p.Gln2872Ter 
 De novo 
  
  
 GEN1494R024 
 stop_gained 
 c.7126G>T 
 p.Glu2376Ter 
 De novo 
  
  
 GEN1494R025 
 stop_gained 
 c.3322G>T 
 p.Glu1108Ter 
 De novo 
  
  
 GEN1494R026 
 stop_gained 
 c.7351C>T 
 p.Gln2451Ter 
 De novo 
  
  
 GEN1494R027 
 missense_variant 
 c.5869G>A 
 p.Ala1957Thr 
 De novo 
  
  
 GEN1494R028 
 frameshift_variant 
 c.1602delC 
 p.Thr535ProfsTer7 
 Unknown 
  
  
 GEN1494R029 
 frameshift_variant 
 c.5840delC 
 p.Pro1947LeufsTer73 
 Unknown 
  
  
 GEN1494R030 
 stop_gained 
 c.6684C>A 
 p.Tyr2228Ter 
 Unknown 
  
  
 GEN1494R031 
 stop_gained 
 c.1027C>T 
 p.Gln343Ter 
 Familial 
 Paternal 
  
 GEN1494R032 
 frameshift_variant 
 c.3001_3006delinsCCCTT 
 p.Ser1001ProfsTer16 
 Familial 
 Paternal 
  
 GEN1494R033 
 stop_gained 
 c.9988C>T 
 p.Arg3330Ter 
 Unknown 
  
  
 GEN1494R034 
 frameshift_variant 
 c.81delC 
 p.Gly28AlafsTer104 
 Unknown 
  
  
 GEN1494R035 
 frameshift_variant 
 c.9707_9708delAC 
 p.Ile3237GlnfsTer2 
 Unknown 
  
  
 GEN1494R036 
 stop_gained 
 c.8614C>T 
 p.Gln2872Ter 
 Unknown 
  
  
 GEN1494R037 
 frameshift_variant 
 c.8628_8629delinsA 
 p.Leu2877TrpfsTer17 
 Unknown 
  
  
 GEN1494R038 
 stop_gained 
 c.7801C>T 
 p.Arg2601Ter 
 Unknown 
  
  
 GEN1494R039 
 splice_site_variant 
 c.1986+1G>A 
 p.? 
 Unknown 
  
  
 GEN1494R040 
 frameshift_variant 
 c.2613_2621del 
 p.His872ProfsTer10 
 Unknown 
  
  
 GEN1494R041 
 frameshift_variant 
 c.8628_8629delinsA 
 p.Leu2877TrpfsTer17 
 Unknown 
  
  
 GEN1494R042 
 frameshift_variant 
 c.8628_8629delinsA 
 p.Leu2877TrpfsTer17 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion-Duplication
 17
 
3
Deletion
 2
 
3
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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