Summary Statistics:
ASD Reports: 18
Recent Reports: 2
Annotated variants: 52
Associated CNVs: 10
Evidence score: 3
Gene Score: S
Relevance to Autism
De novo missense variants in the BRAF gene have been identified in ASD probands from the Autism Sequencing Consortium (De Rubeis et al., 2014) and the SPARK cohort (Wang et al., 2020). Single-molecular molecular inversion probe (smMIP) sequencing of 125 genes in over 16,000 cases with neurodevelopmental disorders and comparison of the mutation burden to non-psychiatric controls from ExAC in Wang et al., 2020 identified BRAF as a gene showing a significant burden of ultra-rare (MAF < 0.01%) missense variants with CADD scores equal to or greater than 30 (Mis30 variants) with a false discovery rate (FDR) less than 5%; a total of 11 Mis30 variants in BRAF from 14 individuals were used in this analysis, with 5 of these individuals coming from cohorts with a primary diagnosis of ASD. Patients with cardiofaciocutaneous syndrome mediated by BRAF mutations were found in two reports to frequently exhibit autistic features, such as social impairment and internalizing/externalizing problems, as measured by commonly used ASD-related diagnostic tools (Alfieri et al., 2014; Adviento et al., 2014).
Molecular Function
This gene encodes a protein belonging to the raf/mil family of serine/threonine protein kinases. This protein plays a role in regulating the MAP kinase/ERKs signaling pathway, which affects cell division, differentiation, and secretion. Mutations in this gene are associated with cardiofaciocutaneous syndrome (CFC) [MIM:115150], a disease characterized by heart defects, mental retardation and a distinctive facial appearance. Mutations in this gene have also been associated with various cancers, including non-Hodgkin lymphoma, colorectal cancer, malignant melanoma, thyroid carcinoma, non-small cell lung carcinoma, and adenocarcinoma of lung.
References
Primary
Behavioral profile in RASopathies.
Cardiofaciocutaneous syndrome
Autistic features, ID
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Deep phenotyping and whole-exome sequencing improved the diagnostic yield for nuclear pedigrees with neurodevelopmental disorders
DD, ID
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
DD/ID
ASD
Support
Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: genotype-phenotype relationships and overlap with ...
Cardiofaciocutaneous syndrome
Autistic features
Support
Genetic and phenotypic analysis of 101 patients with developmental delay or intellectual disability using whole-exome sequencing
ASD, DD, epilepsy/seizures
Support
DD
ADHD, epilepsy/seizures
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ID, motor delay
Support
Integrating de novo and inherited variants in 42
ASD
Support
Cardiofaciocutaneous syndrome, DD, epilepsy/seizur
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Highly Cited
Germline KRAS and BRAF mutations in cardio-facio-cutaneous syndrome.
Highly Cited
Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome.
Recent Recommendation
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Recent Recommendation
Autism traits in the RASopathies.
Cardiofaciocutaneous syndrome
Autistic features
GEN595R001
missense_variant
Unknown
Unknown
GEN595R002
missense_variant
c.1406G>A
p.Gly469Glu
Unknown
Unknown
GEN595R003
missense_variant
Unknown
Unknown
GEN595R004
missense_variant
c.1574T>C
p.Leu525Pro
Unknown
Unknown
GEN595R005
missense_variant
c.1593G>C
p.Trp531Cys
Unknown
Unknown
GEN595R006
missense_variant
c.1783T>C
p.Phe595Leu
Unknown
Unknown
GEN595R007
missense_variant
c.1801A>C
p.Lys601Gln
Unknown
Unknown
GEN595R008
missense_variant
c.2126A>G
p.Gln709Arg
Unknown
Unknown
GEN595R009
missense_variant
c.625A>T
p.Lys209Ile
De novo
Simplex
GEN595R010
missense_variant
c.418G>A
p.Cys140Tyr
De novo
Simplex
GEN595R011
missense_variant
c.1399T>G
p.Ser467Ala
De novo
GEN595R012
missense_variant
c.770A>G
p.Gln257Arg
De novo
Simplex
GEN595R013
missense_variant
c.1357C>G
p.Pro453Ala
De novo
GEN595R014
missense_variant
c.622A>G
p.Ile208Val
De novo
GEN595R015
missense_variant
c.2012G>A
p.Arg671Gln
Unknown
GEN595R016
missense_variant
c.1673G>A
p.Arg558Gln
Unknown
GEN595R017
missense_variant
c.1552G>T
p.Gly518Cys
Unknown
GEN595R018
missense_variant
c.752G>A
p.Cys251Tyr
Unknown
GEN595R019
missense_variant
c.436C>T
p.Arg146Trp
Unknown
GEN595R020
splice_site_variant
n.719+1G>T
p.?
Unknown
GEN595R021
missense_variant
c.1673G>T
p.Arg558Leu
Unknown
GEN595R022
missense_variant
c.1673G>T
p.Arg558Leu
Unknown
GEN595R023
missense_variant
c.1595G>A
p.Cys532Tyr
Unknown
GEN595R024
missense_variant
c.1593G>C
p.Trp531Cys
Unknown
GEN595R025
missense_variant
c.1490C>T
p.Ala497Val
Unknown
GEN595R026
missense_variant
c.436C>T
p.Arg146Trp
Unknown
GEN595R027
missense_variant
c.722C>T
p.Thr241Met
Unknown
GEN595R028
missense_variant
c.722C>T
p.Thr241Met
Unknown
GEN595R029
missense_variant
c.1820C>T
p.Ser607Phe
Unknown
GEN595R030
missense_variant
c.1802A>T
p.Lys601Ile
De novo
GEN595R031
missense_variant
c.1595G>A
p.Cys532Tyr
De novo
GEN595R032
missense_variant
c.1591T>A
p.Trp531Arg
De novo
GEN595R033
missense_variant
c.739T>G
p.Phe247Val
De novo
GEN595R034
missense_variant
c.770A>G
p.Gln257Arg
De novo
GEN595R035
missense_variant
c.1738A>G
p.Asn580Asp
De novo
GEN595R036
missense_variant
c.722C>T
p.Thr241Met
De novo
Simplex
GEN595R037
missense_variant
c.1593G>T
p.Trp531Cys
De novo
Simplex
GEN595R038
missense_variant
c.1801A>C
p.Lys601Gln
Unknown
Unknown
GEN595R039
missense_variant
c.1455G>C
p.Leu485Phe
Unknown
Unknown
GEN595R040
missense_variant
c.1914T>A
p.Ala638%3D
Unknown
Unknown
GEN595R041
missense_variant
c.2296C>T
p.Arg766Cys
Unknown
GEN595R042
missense_variant
c.1713G>T
p.Trp571Cys
Unknown
GEN595R043
missense_variant
c.1497A>C
p.Lys499Asn
De novo
Simplex
GEN595R044
missense_variant
c.1789C>G
p.Leu597Val
Unknown
GEN595R045
synonymous_variant
c.1410A>C
p.Ser470%3D
De novo
GEN595R046
missense_variant
c.35C>T
p.Ala12Val
De novo
GEN595R047
missense_variant
c.35C>T
p.Ala12Val
De novo
Simplex
GEN595R048
missense_variant
c.722C>T
p.Thr241Met
De novo
Simplex
GEN595R049
missense_variant
c.722C>T
p.Thr241Met
Unknown
GEN595R050
missense_variant
c.1495A>G
p.Lys499Glu
Unknown
GEN595R051
missense_variant
c.1501G>A
p.Glu501Lys
Unknown
GEN595R052
missense_variant
c.2279A>G
p.Tyr760Cys
Unknown
No Common Variants Available
7
Deletion-Duplication
20
No Animal Model Data Available
Summary Statistics:
Total Interactions: 21
Total Publications: 3
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ARAF
v-raf murine sarcoma 3611 viral oncogene homolog
369
P10398
IP; LC-MS/MS
Huttlin EL , et al. 2015
ARMCX3
armadillo repeat containing, X-linked 3
51566
Q9UH62
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
FKBPL
FK506 binding protein like
63943
Q9UIM3
IP; LC-MS/MS
Huttlin EL , et al. 2015
HRAS
v-Ha-ras Harvey rat sarcoma viral oncogene homolog
3265
P01112
IP; LC-MS/MS
Huttlin EL , et al. 2015
KCNC4
potassium voltage-gated channel, Shaw-related subfamily, member 4
3749
Q03721
IP; LC-MS/MS
Huttlin EL , et al. 2015
KIAA0141
KIAA0141
NM_014773
Q14154
IP; LC-MS/MS
Huttlin EL , et al. 2015
KRAS
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
3845
P01116
IP; LC-MS/MS
Huttlin EL , et al. 2015
LIPF
Gastric triacylglycerol lipase
8513
P07098
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAP2K1
mitogen-activated protein kinase kinase 1
5604
A4QPA9
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAP2K2
mitogen-activated protein kinase kinase 2
5605
P36507
IP; LC-MS/MS
Huttlin EL , et al. 2015
PTEN
phosphatase and tensin homolog
5728
F6KD01
IP/WB
Silva JM , et al. 2014
RAB3GAP1
RAB3 GTPase activating protein subunit 1 (catalytic)
22930
C9J837
IP; LC-MS/MS
Huttlin EL , et al. 2015
RAF1
v-raf-1 murine leukemia viral oncogene homolog 1
5894
P04049
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPTOR
regulatory associated protein of MTOR, complex 1
57521
Q8N122
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAB
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
7529
P31946
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAE
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
7531
P62258
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAG
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
7532
P61981
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAH
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
7533
Q04917
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAQ
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
10971
P27348
IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAZ
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
7534
P63104
IP; LC-MS/MS
Huttlin EL , et al. 2015