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Relevance to Autism

De novo missense variants in the BRAF gene have been identified in ASD probands from the Autism Sequencing Consortium (De Rubeis et al., 2014) and the SPARK cohort (Wang et al., 2020). Single-molecular molecular inversion probe (smMIP) sequencing of 125 genes in over 16,000 cases with neurodevelopmental disorders and comparison of the mutation burden to non-psychiatric controls from ExAC in Wang et al., 2020 identified BRAF as a gene showing a significant burden of ultra-rare (MAF < 0.01%) missense variants with CADD scores equal to or greater than 30 (Mis30 variants) with a false discovery rate (FDR) less than 5%; a total of 11 Mis30 variants in BRAF from 14 individuals were used in this analysis, with 5 of these individuals coming from cohorts with a primary diagnosis of ASD. Patients with cardiofaciocutaneous syndrome mediated by BRAF mutations were found in two reports to frequently exhibit autistic features, such as social impairment and internalizing/externalizing problems, as measured by commonly used ASD-related diagnostic tools (Alfieri et al., 2014; Adviento et al., 2014).

Molecular Function

This gene encodes a protein belonging to the raf/mil family of serine/threonine protein kinases. This protein plays a role in regulating the MAP kinase/ERKs signaling pathway, which affects cell division, differentiation, and secretion. Mutations in this gene are associated with cardiofaciocutaneous syndrome (CFC) [MIM:115150], a disease characterized by heart defects, mental retardation and a distinctive facial appearance. Mutations in this gene have also been associated with various cancers, including non-Hodgkin lymphoma, colorectal cancer, malignant melanoma, thyroid carcinoma, non-small cell lung carcinoma, and adenocarcinoma of lung.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Behavioral profile in RASopathies.
Cardiofaciocutaneous syndrome
Autistic features, ID
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Deep phenotyping and whole-exome sequencing improved the diagnostic yield for nuclear pedigrees with neurodevelopmental disorders
DD, ID
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
DD/ID
ASD
Support
Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: genotype-phenotype relationships and overlap with ...
Cardiofaciocutaneous syndrome
Autistic features
Support
Genetic and phenotypic analysis of 101 patients with developmental delay or intellectual disability using whole-exome sequencing
ASD, DD, epilepsy/seizures
Support
DD
ADHD, epilepsy/seizures
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ID, motor delay
Support
Integrating de novo and inherited variants in 42
ASD
Support
Cardiofaciocutaneous syndrome, DD, epilepsy/seizur
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Highly Cited
Germline KRAS and BRAF mutations in cardio-facio-cutaneous syndrome.
Highly Cited
Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome.
Recent Recommendation
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Recent Recommendation
Autism traits in the RASopathies.
Cardiofaciocutaneous syndrome
Autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN595R001 
 missense_variant 
  
  
 Unknown 
  
 Unknown 
 GEN595R002 
 missense_variant 
 c.1406G>A 
 p.Gly469Glu 
 Unknown 
  
 Unknown 
 GEN595R003 
 missense_variant 
  
  
 Unknown 
  
 Unknown 
 GEN595R004 
 missense_variant 
 c.1574T>C 
 p.Leu525Pro 
 Unknown 
  
 Unknown 
 GEN595R005 
 missense_variant 
 c.1593G>C 
 p.Trp531Cys 
 Unknown 
  
 Unknown 
 GEN595R006 
 missense_variant 
 c.1783T>C 
 p.Phe595Leu 
 Unknown 
  
 Unknown 
 GEN595R007 
 missense_variant 
 c.1801A>C 
 p.Lys601Gln 
 Unknown 
  
 Unknown 
 GEN595R008 
 missense_variant 
 c.2126A>G 
 p.Gln709Arg 
 Unknown 
  
 Unknown 
 GEN595R009 
 missense_variant 
 c.625A>T 
 p.Lys209Ile 
 De novo 
  
 Simplex 
 GEN595R010 
 missense_variant 
 c.418G>A 
 p.Cys140Tyr 
 De novo 
  
 Simplex 
 GEN595R011 
 missense_variant 
 c.1399T>G 
 p.Ser467Ala 
 De novo 
  
  
 GEN595R012 
 missense_variant 
 c.770A>G 
 p.Gln257Arg 
 De novo 
  
 Simplex 
 GEN595R013 
 missense_variant 
 c.1357C>G 
 p.Pro453Ala 
 De novo 
  
  
 GEN595R014 
 missense_variant 
 c.622A>G 
 p.Ile208Val 
 De novo 
  
  
 GEN595R015 
 missense_variant 
 c.2012G>A 
 p.Arg671Gln 
 Unknown 
  
  
 GEN595R016 
 missense_variant 
 c.1673G>A 
 p.Arg558Gln 
 Unknown 
  
  
 GEN595R017 
 missense_variant 
 c.1552G>T 
 p.Gly518Cys 
 Unknown 
  
  
 GEN595R018 
 missense_variant 
 c.752G>A 
 p.Cys251Tyr 
 Unknown 
  
  
 GEN595R019 
 missense_variant 
 c.436C>T 
 p.Arg146Trp 
 Unknown 
  
  
 GEN595R020 
 splice_site_variant 
 n.719+1G>T 
 p.? 
 Unknown 
  
  
 GEN595R021 
 missense_variant 
 c.1673G>T 
 p.Arg558Leu 
 Unknown 
  
  
 GEN595R022 
 missense_variant 
 c.1673G>T 
 p.Arg558Leu 
 Unknown 
  
  
 GEN595R023 
 missense_variant 
 c.1595G>A 
 p.Cys532Tyr 
 Unknown 
  
  
 GEN595R024 
 missense_variant 
 c.1593G>C 
 p.Trp531Cys 
 Unknown 
  
  
 GEN595R025 
 missense_variant 
 c.1490C>T 
 p.Ala497Val 
 Unknown 
  
  
 GEN595R026 
 missense_variant 
 c.436C>T 
 p.Arg146Trp 
 Unknown 
  
  
 GEN595R027 
 missense_variant 
 c.722C>T 
 p.Thr241Met 
 Unknown 
  
  
 GEN595R028 
 missense_variant 
 c.722C>T 
 p.Thr241Met 
 Unknown 
  
  
 GEN595R029 
 missense_variant 
 c.1820C>T 
 p.Ser607Phe 
 Unknown 
  
  
 GEN595R030 
 missense_variant 
 c.1802A>T 
 p.Lys601Ile 
 De novo 
  
  
 GEN595R031 
 missense_variant 
 c.1595G>A 
 p.Cys532Tyr 
 De novo 
  
  
 GEN595R032 
 missense_variant 
 c.1591T>A 
 p.Trp531Arg 
 De novo 
  
  
 GEN595R033 
 missense_variant 
 c.739T>G 
 p.Phe247Val 
 De novo 
  
  
 GEN595R034 
 missense_variant 
 c.770A>G 
 p.Gln257Arg 
 De novo 
  
  
 GEN595R035 
 missense_variant 
 c.1738A>G 
 p.Asn580Asp 
 De novo 
  
  
 GEN595R036 
 missense_variant 
 c.722C>T 
 p.Thr241Met 
 De novo 
  
 Simplex 
 GEN595R037 
 missense_variant 
 c.1593G>T 
 p.Trp531Cys 
 De novo 
  
 Simplex 
 GEN595R038 
 missense_variant 
 c.1801A>C 
 p.Lys601Gln 
 Unknown 
  
 Unknown 
 GEN595R039 
 missense_variant 
 c.1455G>C 
 p.Leu485Phe 
 Unknown 
  
 Unknown 
 GEN595R040 
 missense_variant 
 c.1914T>A 
 p.Ala638%3D 
 Unknown 
  
 Unknown 
 GEN595R041 
 missense_variant 
 c.2296C>T 
 p.Arg766Cys 
 Unknown 
  
  
 GEN595R042 
 missense_variant 
 c.1713G>T 
 p.Trp571Cys 
 Unknown 
  
  
 GEN595R043 
 missense_variant 
 c.1497A>C 
 p.Lys499Asn 
 De novo 
  
 Simplex 
 GEN595R044 
 missense_variant 
 c.1789C>G 
 p.Leu597Val 
 Unknown 
  
  
 GEN595R045 
 synonymous_variant 
 c.1410A>C 
 p.Ser470%3D 
 De novo 
  
  
 GEN595R046 
 missense_variant 
 c.35C>T 
 p.Ala12Val 
 De novo 
  
  
 GEN595R047 
 missense_variant 
 c.35C>T 
 p.Ala12Val 
 De novo 
  
 Simplex 
 GEN595R048 
 missense_variant 
 c.722C>T 
 p.Thr241Met 
 De novo 
  
 Simplex 
 GEN595R049 
 missense_variant 
 c.722C>T 
 p.Thr241Met 
 Unknown 
  
  
  et al.  
 GEN595R050 
 missense_variant 
 c.1495A>G 
 p.Lys499Glu 
 Unknown 
  
  
  et al.  
 GEN595R051 
 missense_variant 
 c.1501G>A 
 p.Glu501Lys 
 Unknown 
  
  
  et al.  
 GEN595R052 
 missense_variant 
 c.2279A>G 
 p.Tyr760Cys 
 Unknown 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Duplication
 1
 
7
Deletion
 1
 
7
Duplication
 1
 
7
Deletion
 2
 
7
Deletion
 1
 
7
Duplication
 1
 
7
Deletion-Duplication
 20
 
7
Deletion
 1
 
7
Deletion
 4
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ARAF v-raf murine sarcoma 3611 viral oncogene homolog 369 P10398 IP; LC-MS/MS
Huttlin EL , et al. 2015
ARMCX3 armadillo repeat containing, X-linked 3 51566 Q9UH62 IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8 chromodomain helicase DNA binding protein 8 57680 Q9HCK8 CHIP-seq
Cotney J , et al. 2015
FKBPL FK506 binding protein like 63943 Q9UIM3 IP; LC-MS/MS
Huttlin EL , et al. 2015
HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 3265 P01112 IP; LC-MS/MS
Huttlin EL , et al. 2015
KCNC4 potassium voltage-gated channel, Shaw-related subfamily, member 4 3749 Q03721 IP; LC-MS/MS
Huttlin EL , et al. 2015
KIAA0141 KIAA0141 NM_014773 Q14154 IP; LC-MS/MS
Huttlin EL , et al. 2015
KRAS v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 3845 P01116 IP; LC-MS/MS
Huttlin EL , et al. 2015
LIPF Gastric triacylglycerol lipase 8513 P07098 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAP2K1 mitogen-activated protein kinase kinase 1 5604 A4QPA9 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAP2K2 mitogen-activated protein kinase kinase 2 5605 P36507 IP; LC-MS/MS
Huttlin EL , et al. 2015
PTEN phosphatase and tensin homolog 5728 F6KD01 IP/WB
Silva JM , et al. 2014
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 22930 C9J837 IP; LC-MS/MS
Huttlin EL , et al. 2015
RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 5894 P04049 IP; LC-MS/MS
Huttlin EL , et al. 2015
RPTOR regulatory associated protein of MTOR, complex 1 57521 Q8N122 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 7529 P31946 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 7531 P62258 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 7532 P61981 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 7533 Q04917 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 10971 P27348 IP; LC-MS/MS
Huttlin EL , et al. 2015
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 7534 P63104 IP; LC-MS/MS
Huttlin EL , et al. 2015

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