Summary Statistics:
ASD Reports: 12
Recent Reports: 1
Annotated variants: 85
Associated CNVs: 12
Evidence score: 4
Gene Score:
Relevance to Autism
Rare variants in the BCL11B gene are responsible for intellectual developmental disorder with dysmorphic facies, speech delay, and T-cell abnormalities (OMIM 618092), a neurodevelopmental disorder characterized by developmental delay, intellectual disability, behavioral abnormalities including autism spectrum disorder or autistic features, dysmorphic features, and immunological abnormalities (Lessel et al., 2018; Sabbagh et al., 2023). Additional rare de novo variants in the BCL11B gene, including a de novo loss-of-function variant and three de novo missense variants, have been reported in ASD probands (Satterstrom et al., 2020; Zhou et al., 2022).
Molecular Function
This gene encodes a C2H2-type zinc finger protein and is closely related to BCL11A, a gene whose translocation may be associated with B-cell malignancies. Although the specific function of this gene has not been determined, the encoded protein is known to be a transcriptional repressor, and is regulated by the NURD nucleosome remodeling and histone deacetylase complex.
References
Primary
Clinico-biological refinement of BCL11B-related disorder and identification of an episignature: A series of 20 unreported individuals
DD, ID
ASD, ADHD
Support
Exome sequencing improves the molecular diagnostics of paediatric unexplained neurodevelopmental disorders
DD, ID
Support
Reanalysis of Trio Whole-Genome Sequencing Data Doubles the Yield in Autism Spectrum Disorder: De Novo Variants Present in Half
ASD
Learning disability
Support
A novel heterozygous mutation of BCL11B gene causes neurodevelopmental disorder and middle type hypospadias in a Chinese boy with 5 years follow-up
Intellectual developmental disorder with dysmorphi
Support
Integrating de novo and inherited variants in 42
ASD
Support
Massively parallel characterization of non-coding de novo mutations in autism spectrum disorder
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
BCL11B-related disease: a single phenotypic entity?
DD, ID
Autistic features
Support
BCL11B mutations in patients affected by a neurodevelopmental disorder with reduced type 2 innate lymphoid cells
Intellectual developmental disorder with dysmorphi
Autistic features
Support
Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
DD
ASD
Support
Regulation of hippocampal mossy fiber-CA3 synapse function by a Bcl11b/C1ql2/Nrxn3(25b+) pathway
Recent Recommendation
DNA-binding affinity and specificity determine the phenotypic diversity in BCL11B-related disorders
DD, ID
ASD, ADHD, OCD, epilepsy/seizures
GEN1423R001
frameshift_variant
c.1952_1964del
p.Val651GlyfsTer68
De novo
GEN1423R002
frameshift_variant
c.1887_1893del
p.Gly630ThrfsTer91
De novo
GEN1423R003
frameshift_variant
c.1967del
p.Gly656AlafsTer67
De novo
GEN1423R004
frameshift_variant
c.1887_1893del
p.Gly630ThrfsTer91
De novo
GEN1423R005
frameshift_variant
c.2616_2617del
p.Met873GlufsTer11
De novo
GEN1423R006
frameshift_variant
c.1944_1965del
p.Gly649AlafsTer67
De novo
GEN1423R007
missense_variant
c.2476T>C
p.Cys826Arg
De novo
GEN1423R008
missense_variant
c.2258C>G
p.Ser753Cys
De novo
GEN1423R009
frameshift_variant
c.657del
p.Ser220AlafsTer61
De novo
GEN1423R010
copy_number_loss
De novo
GEN1423R011
frameshift_variant
c.1500dup
p.Gly501ArgfsTer16
De novo
GEN1423R012
frameshift_variant
c.784_820del
p.Arg262TrpfsTer7
De novo
GEN1423R013
frameshift_variant
c.1216_1217insACGC
p.Thr406AsnfsTer112
De novo
GEN1423R014
stop_gained
c.682C>T
p.Gln228Ter
De novo
GEN1423R015
copy_number_loss
De novo
GEN1423R016
copy_number_loss
De novo
GEN1423R017
frameshift_variant
c.2646_2649del
p.Asn884ThrfsTer112
De novo
GEN1423R018
copy_number_loss
De novo
GEN1423R019
frameshift_variant
c.1944_1965del
p.Gly649AlafsTer67
De novo
GEN1423R020
stop_gained
c.2473A>T
p.Lys825Ter
Familial
Maternal
GEN1423R021
frameshift_variant
c.600_606dup
p.Glu203SerfsTer15
Familial
Maternal
Multiplex
GEN1423R022
frameshift_variant
c.600_606dup
p.Glu203SerfsTer15
Unknown
GEN1423R023
initiator_codon_variant
c.2T>C
p.Met1?
De novo
GEN1423R024
missense_variant
c.2174C>A
p.Pro725His
De novo
GEN1423R025
frameshift_variant
c.2446_2453dup
p.Gly819AlafsTer27
De novo
Simplex
GEN1423R026
frameshift_variant
c.1944_1965del
p.Gly649AlafsTer67
De novo
Simplex
GEN1423R027
frameshift_variant
c.2668del
p.Ala890ProfsTer106
De novo
Simplex
GEN1423R028
frameshift_variant
c.1499dup
p.Thr501HisfsTer15
De novo
Simplex
GEN1423R029
missense_variant
c.2421C>G
p.Asn807Lys
De novo
GEN1423R030
frameshift_variant
c.239del
p.Cys80LeufsTer76
De novo
GEN1423R031
frameshift_variant
c.1597del
p.Asp533ThrfsTer29
Familial
Maternal
GEN1423R032
translocation
De novo
GEN1423R033
translocation
De novo
Simplex
GEN1423R034
stop_gained
c.1495G>T
p.Glu499Ter
De novo
GEN1423R035
stop_gained
c.1362_1364del
p.Tyr454_Lys455delinsTer
De novo
Simplex
GEN1423R036
frameshift_variant
c.1549del
p.Arg517AlafsTer45
De novo
Simplex
GEN1423R037
missense_variant
c.56C>G
p.Thr19Ser
De novo
GEN1423R038
missense_variant
c.2631C>G
p.His877Gln
De novo
Simplex
GEN1423R039
frameshift_variant
c.2494dup
p.Ala832GlyfsTer53
De novo
GEN1423R040
missense_variant
c.13A>C
p.Lys5Gln
De novo
Simplex
GEN1423R041
missense_variant
c.2036C>T
p.Pro679Leu
Familial
Paternal
Multiplex
GEN1423R042
frameshift_variant
c.2037del
p.Leu681SerfsTer42
De novo
GEN1423R043
missense_variant
c.2421C>G
p.Asn807Lys
De novo
GEN1423R044
frameshift_variant
c.1742del
p.Gly581AlafsTer24
De novo
GEN1423R045
stop_gained
c.2472C>A
p.Tyr824Ter
De novo
GEN1423R046
stop_gained
c.183_189delTCAAATG
p.Cys61Ter
De novo
Simplex
GEN1423R047
stop_gained
c.183_189delTCAAATG
p.Cys61Ter
De novo
Simplex
GEN1423R048
frameshift_variant
c.1460_1485delGCTCCGACGACGGGCTCTCGGCCGCC
p.Arg487GlnfsTer21
De novo
Simplex
GEN1423R049
frameshift_variant
c.1474delC
p.Leu492SerfsTer71
Familial
Maternal
Simplex
GEN1423R050
frameshift_variant
c.1552delC
p.Arg518AlafsTer45
De novo
Simplex
GEN1423R051
frameshift_variant
c.1742delG
p.Gly581AlafsTer24
De novo
Simplex
GEN1423R052
frameshift_variant
c.1770_1771delGA
p.Lys591GlyfsTer293
De novo
Simplex
GEN1423R053
frameshift_variant
c.1887_1893delCGGCGGG
p.Gly630ThrfsTer91
Unknown
GEN1423R054
frameshift_variant
c.1887_1893delCGGCGGG
p.Gly630ThrfsTer91
De novo
Simplex
GEN1423R055
frameshift_variant
c.1887_1893delCGGCGGG
p.Gly630ThrfsTer91
De novo
Simplex
GEN1423R056
frameshift_variant
c.1944_1965delCGGCGCGGTCAACGGGCGCGGG
p.Gly649AlafsTer67
De novo
GEN1423R057
frameshift_variant
c.1988delA
p.Glu663GlyfsTer60
De novo
Simplex
GEN1423R058
frameshift_variant
c.2119_2126delGTGTACTCinsA
p.Val707SerfsTer14
De novo
Simplex
GEN1423R059
frameshift_variant
c.2348delG
p.Gly783AlafsTer29
De novo
Simplex
GEN1423R060
frameshift_variant
c.2448delG
p.Ser817AlafsTer27
De novo
Simplex
GEN1423R061
frameshift_variant
c.2448_2461delGAGCCACACCGGCG
p.Ser817AlafsTer63
De novo
Simplex
GEN1423R062
frameshift_variant
c.2449_2462delGCACCGGCGGAGCC
p.Ser817AlafsTer63
De novo
Simplex
GEN1423R063
frameshift_variant
c.2439_2452dupGCACCGGCGGAGCC
p.His818ArgfsTer31
De novo
Simplex
GEN1423R064
frameshift_variant
c.2439_2452dupGGCTCCGCCGGTGC
p.His818ArgfsTer31
De novo
Simplex
GEN1423R065
frameshift_variant
c.2499delC
p.Cys833TrpfsTer11
De novo (germline mosaicism)
Multiplex
GEN1423R066
missense_variant
c.1407G>T
p.Lys469Asn
De novo
Simplex
GEN1423R067
missense_variant
c.1407G>C
p.Lys469Asn
De novo
Simplex
GEN1423R068
missense_variant
c.1414C>T
p.Arg472Cys
De novo
Simplex
GEN1423R069
missense_variant
c.2421C>G
p.Asn807Lys
De novo
Simplex
GEN1423R070
missense_variant
c.2422T>C
p.Cys808Arg
Familial
Paternal
Multiplex
GEN1423R071
missense_variant
c.2507G>A
p.Ser836Asn
De novo
Simplex
GEN1423R072
missense_variant
c.2507G>A
p.Ser836Asn
De novo
Simplex
GEN1423R073
missense_variant
c.2513A>C
p.Lys838Thr
De novo
Simplex
GEN1423R074
missense_variant
c.2513A>G
p.Lys838Arg
De novo
Simplex
GEN1423R075
missense_variant
c.2519C>T
p.Thr840Met
De novo
Simplex
GEN1423R076
missense_variant
c.2522G>T
p.Arg841Leu
De novo
Simplex
GEN1423R077
missense_variant
c.2525A>C
p.His842Pro
De novo
Simplex
GEN1423R078
missense_variant
c.2536C>G
p.His846Asp
De novo
GEN1423R079
missense_variant
c.2629C>T
p.His877Tyr
De novo
Simplex
GEN1423R080
frameshift_variant
c.781_808dup
p.Gly270AlafsTer256
De novo
Simplex
GEN1423R081
frameshift_variant
c.2438_2459del
p.Val813AlafsTer24
De novo
GEN1423R082
copy_number_loss
Unknown
GEN1423R083
frameshift_variant
c.400_403dup
p.Cys135TyrfsTer61
De novo
GEN1423R084
intron_variant
c.428-11405C>T
De novo
Simplex
GEN1423R085
frameshift_variant
c.1176_1179dup
p.Pro394GlufsTer124
De novo
Simplex
No Common Variants Available
14
Deletion-Duplication
23
No Animal Model Data Available
No PIN Data Available