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Relevance to Autism

Rare variants in the BCL11B gene are responsible for intellectual developmental disorder with dysmorphic facies, speech delay, and T-cell abnormalities (OMIM 618092), a neurodevelopmental disorder characterized by developmental delay, intellectual disability, behavioral abnormalities including autism spectrum disorder or autistic features, dysmorphic features, and immunological abnormalities (Lessel et al., 2018; Sabbagh et al., 2023). Additional rare de novo variants in the BCL11B gene, including a de novo loss-of-function variant and three de novo missense variants, have been reported in ASD probands (Satterstrom et al., 2020; Zhou et al., 2022).

Molecular Function

This gene encodes a C2H2-type zinc finger protein and is closely related to BCL11A, a gene whose translocation may be associated with B-cell malignancies. Although the specific function of this gene has not been determined, the encoded protein is known to be a transcriptional repressor, and is regulated by the NURD nucleosome remodeling and histone deacetylase complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
DD, ID
ASD, ADHD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Intellectual developmental disorder with dysmorphi
Autistic features
Support
Support
DD, ID
Support
ASD
Learning disability
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1423R001 
 frameshift_variant 
 c.1952_1964del 
 p.Val651GlyfsTer68 
 De novo 
  
  
  et al.  
 GEN1423R002 
 frameshift_variant 
 c.1887_1893del 
 p.Gly630ThrfsTer91 
 De novo 
  
  
  et al.  
 GEN1423R003 
 frameshift_variant 
 c.1967del 
 p.Gly656AlafsTer67 
 De novo 
  
  
  et al.  
 GEN1423R004 
 frameshift_variant 
 c.1887_1893del 
 p.Gly630ThrfsTer91 
 De novo 
  
  
  et al.  
 GEN1423R005 
 frameshift_variant 
 c.2616_2617del 
 p.Met873GlufsTer11 
 De novo 
  
  
  et al.  
 GEN1423R006 
 frameshift_variant 
 c.1944_1965del 
 p.Gly649AlafsTer67 
 De novo 
  
  
  et al.  
 GEN1423R007 
 missense_variant 
 c.2476T>C 
 p.Cys826Arg 
 De novo 
  
  
  et al.  
 GEN1423R008 
 missense_variant 
 c.2258C>G 
 p.Ser753Cys 
 De novo 
  
  
  et al.  
 GEN1423R009 
 frameshift_variant 
 c.657del 
 p.Ser220AlafsTer61 
 De novo 
  
  
  et al.  
 GEN1423R010 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN1423R011 
 frameshift_variant 
 c.1500dup 
 p.Gly501ArgfsTer16 
 De novo 
  
  
  et al.  
 GEN1423R012 
 frameshift_variant 
 c.784_820del 
 p.Arg262TrpfsTer7 
 De novo 
  
  
  et al.  
 GEN1423R013 
 frameshift_variant 
 c.1216_1217insACGC 
 p.Thr406AsnfsTer112 
 De novo 
  
  
  et al.  
 GEN1423R014 
 stop_gained 
 c.682C>T 
 p.Gln228Ter 
 De novo 
  
  
  et al.  
 GEN1423R015 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN1423R016 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN1423R017 
 frameshift_variant 
 c.2646_2649del 
 p.Asn884ThrfsTer112 
 De novo 
  
  
  et al.  
 GEN1423R018 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN1423R019 
 frameshift_variant 
 c.1944_1965del 
 p.Gly649AlafsTer67 
 De novo 
  
  
  et al.  
 GEN1423R020 
 stop_gained 
 c.2473A>T 
 p.Lys825Ter 
 Familial 
 Maternal 
  
  et al.  
 GEN1423R021 
 frameshift_variant 
 c.600_606dup 
 p.Glu203SerfsTer15 
 Familial 
 Maternal 
 Multiplex 
  et al.  
 GEN1423R022 
 frameshift_variant 
 c.600_606dup 
 p.Glu203SerfsTer15 
 Unknown 
  
  
  et al.  
 GEN1423R023 
 initiator_codon_variant 
 c.2T>C 
 p.Met1? 
 De novo 
  
  
  et al.  
 GEN1423R024 
 missense_variant 
 c.2174C>A 
 p.Pro725His 
 De novo 
  
  
  et al.  
 GEN1423R025 
 frameshift_variant 
 c.2446_2453dup 
 p.Gly819AlafsTer27 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R026 
 frameshift_variant 
 c.1944_1965del 
 p.Gly649AlafsTer67 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R027 
 frameshift_variant 
 c.2668del 
 p.Ala890ProfsTer106 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R028 
 frameshift_variant 
 c.1499dup 
 p.Thr501HisfsTer15 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R029 
 missense_variant 
 c.2421C>G 
 p.Asn807Lys 
 De novo 
  
  
  et al.  
 GEN1423R030 
 frameshift_variant 
 c.239del 
 p.Cys80LeufsTer76 
 De novo 
  
  
  et al.  
 GEN1423R031 
 frameshift_variant 
 c.1597del 
 p.Asp533ThrfsTer29 
 Familial 
 Maternal 
  
  et al.  
 GEN1423R032 
 translocation 
  
  
 De novo 
  
  
  et al.  
 GEN1423R033 
 translocation 
  
  
 De novo 
  
 Simplex 
  et al.  
 GEN1423R034 
 stop_gained 
 c.1495G>T 
 p.Glu499Ter 
 De novo 
  
  
  et al.  
 GEN1423R035 
 stop_gained 
 c.1362_1364del 
 p.Tyr454_Lys455delinsTer 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R036 
 frameshift_variant 
 c.1549del 
 p.Arg517AlafsTer45 
 De novo 
  
 Simplex 
  et al.  
 GEN1423R037 
 missense_variant 
 c.56C>G 
 p.Thr19Ser 
 De novo 
  
  
 GEN1423R038 
 missense_variant 
 c.2631C>G 
 p.His877Gln 
 De novo 
  
 Simplex 
 GEN1423R039 
 frameshift_variant 
 c.2494dup 
 p.Ala832GlyfsTer53 
 De novo 
  
  
 GEN1423R040 
 missense_variant 
 c.13A>C 
 p.Lys5Gln 
 De novo 
  
 Simplex 
 GEN1423R041 
 missense_variant 
 c.2036C>T 
 p.Pro679Leu 
 Familial 
 Paternal 
 Multiplex 
  et al.  
 GEN1423R042 
 frameshift_variant 
 c.2037del 
 p.Leu681SerfsTer42 
 De novo 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Duplication
 1
 
14
Duplication
 1
 
14
Deletion
 1
 
14
Duplication
 2
 
14
Duplication
 1
 
14
Duplication
 2
 
14
Duplication
 1
 
14
Deletion-Duplication
 22
 
14
Deletion
 6
 
14
Deletion
 1
 
14
Deletion
 4
 

No Animal Model Data Available

No PIN Data Available
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