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Relevance to Autism

This gene was originally identified as an ASD candidate gene based on its enrichment in an autism-associated protein interaction module. Sequencing of post-mortem brain tissue from 25 ASD cases resulted in the identification of significant non-synonymous variants in this gene with an expected false-positive rate at 0.1, confirming the involvement of this module with autism; this finding was further validated by exome sequencing of an independent cohort of 505 ASD cases and 491 controls (Li et al., 2014).

Molecular Function

This gene is a candidate oncogene that resides in a region at 20q13 which is amplified in a variety of tumor types and associated with more aggressive tumor phenotypes. It is expressed in brain and prostate, and at lower levels in testis, intestine and colon, overexpressed in most breast cancer cell lines, and down-regulated in some colorectal tumors.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Homozygous deletions implicate non-coding epigenetic marks in Autism spectrum disorder
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN674R001 
 nonsynonymous_variant 
  
  
 Unknown 
  
 Unknown 
 GEN674R002 
 nonsynonymous_variant 
  
  
 Unknown 
  
 Unknown 
 GEN674R003 
 missense_variant 
 c.723+26T>C 
  
 De novo 
  
 Unknown 
 GEN674R004 
 frameshift_variant 
 c.536del 
 p.Gly179GlufsTer65 
 Familial 
 Paternal 
 Multiplex 
 GEN674R005a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
  
 GEN674R006a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN674R007 
 missense_variant 
 c.1216G>A 
 p.Gly406Ser 
 Unknown 
  
  
 GEN674R008 
 missense_variant 
 c.1388T>C 
 p.Leu463Pro 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Deletion-Duplication
 1
 
20
Duplication
 1
 
20
Deletion-Duplication
 15
 

No Animal Model Data Available

 

No Interactions Available
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