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Relevance to Autism

Rare inherited loss-of-function and damaging missense variants in the ATP6V0A2 gene were identified in ASD probands from the Simons Simplex Collection in Krumm et al., 2015; targeted sequencing of 536 Chinese ASD probands and 1457 Chinese controls in Guo et al., 2017 identified additional rare inherited variants in this gene in ASD probands. Subsequent Transmission and De Novo Association (TADA) analysis In Guo et al., 2017 identified ATP6V0A2 as an ASD candidate gene with a PTADA of 0.007146 in the Chinese ASD case-control cohort and a PTADA of 0.007251 in a combined cohort of Chinese ASD probands and controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium.

Molecular Function

The protein encoded by this gene is a subunit of the vacuolar ATPase (v-ATPase), an heteromultimeric enzyme that is present in intracellular vesicles and in the plasma membrane of specialized cells, and which is essential for the acidification of diverse cellular components. V-ATPase is comprised of a membrane peripheral V(1) domain for ATP hydrolysis, and an integral membrane V(0) domain for proton translocation. The subunit encoded by this gene is a component of the V(0) domain. Biallelic mutations in the ATP6V0A2 gene are associated with autosomal recessive cutis laxa type IIA (ARCL2A; OMIM 219200) and wrinkly skin syndrome (OMIM 278250).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN941R001 
 frameshift_variant 
 c.78dup 
 p.Ser27GlnfsTer28 
 Familial 
 Maternal 
 Simplex 
 GEN941R002 
 missense_variant 
 c.65C>G 
 p.Ala22Gly 
 Familial 
 Paternal 
 Simplex 
 GEN941R003 
 missense_variant 
 c.422G>T 
 p.Arg141Leu 
 Familial 
 Paternal 
 Simplex 
 GEN941R004 
 missense_variant 
 c.422G>A 
 p.Arg141His 
 Familial 
 Paternal 
 Simplex 
 GEN941R005 
 missense_variant 
 c.776G>A 
 p.Arg259Gln 
 Familial 
 Maternal 
 Simplex 
 GEN941R006 
 missense_variant 
 c.1112G>A 
 p.Arg371His 
 Familial 
 Paternal 
 Simplex 
 GEN941R007 
 missense_variant 
 c.1975T>C 
 p.Ser659Pro 
 Familial 
 Paternal 
 Simplex 
 GEN941R008 
 splice_site_variant 
 c.1039-1G>A 
  
 Familial 
 Maternal 
 Simplex 
 GEN941R009 
 splice_site_variant 
 c.2466-2A>G 
  
 Familial 
 Paternal 
 Simplex 
 GEN941R010 
 splice_site_variant 
 c.2466-2A>G 
  
 Familial 
 Maternal 
 Simplex 
 GEN941R011 
 splice_site_variant 
 c.2466-2A>G 
  
 Familial 
 Paternal 
 Simplex 
 GEN941R012 
 missense_variant 
 c.503G>C 
 p.Arg168Thr 
 Familial 
 Paternal 
 Simplex 
 GEN941R013 
 missense_variant 
 c.1609T>G 
 p.Trp537Gly 
 Familial 
 Maternal 
 Simplex 
 GEN941R014 
 frameshift_variant 
 c.353_354del 
 p.Leu118GlnfsTer26 
 Familial 
  
  
 GEN941R015 
 frameshift_variant 
 c.1560_1561insTGCAAAGG 
 p.Ile521CysfsTer30 
 Familial 
  
  
 GEN941R016 
 frameshift_variant 
 c.1563del 
 p.Pro522LeufsTer26 
 Familial 
  
  
 GEN941R017 
 missense_variant 
 c.482T>G 
 p.Leu161Trp 
 Familial 
  
  
 GEN941R018 
 missense_variant 
 c.482T>G 
 p.Leu161Trp 
 Familial 
  
  
 GEN941R019 
 missense_variant 
 c.2384C>T 
 p.Ala795Val 
 Familial 
  
  
 GEN941R020 
 missense_variant 
 c.2477A>C 
 p.Gln826Pro 
 Familial 
  
  
 GEN941R021 
 frameshift_variant 
 c.390_397dup 
 p.Arg133ThrfsTer3 
 Familial 
 Paternal 
 Multiplex 
 GEN941R022 
 missense_variant 
 c.2557G>A 
 p.Asp853Asn 
 Unknown 
  
  
 GEN941R023a 
 splice_region_variant 
 c.2055+4A>G 
  
 Familial 
 Both parents 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Duplication
 3
 
12
Duplication
 1
 
12
Deletion-Duplication
 26
 
12
Duplication
 1
 
12
Deletion-Duplication
 2
 

No Animal Model Data Available

 

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